PROJECT INFORMATION
GOLD Project ID
Gp0020596  
Project Name
Enterococcus phoeniculicola ATCC BAA-412  
Other Names
  
Legacy ER Project ID
9854  
Legacy GOLD ID
Gi16943  
NCBI BioProject Name Enterococcus phoeniculicola ATCC BAA-412
NCBI BioProject Accession PRJNA88857
NCBI Locus Tag
UC3  
NCBI BioSample Accession SAMN00809120
Source Sample ID
PI Unknown
Added By JGI automated process on 2012-04-04
Last Modified By JGI automated process on 2014-05-20
Project Comments
  
Project Status
Permanent Draft  
Project Relevance
  
Sequencing Center Broad Institute (USA)
Collaborating Institute
  
Funding Agency
  
Project Description
Enterococcus phoeniculicola ATCC BAA-412 Genome sequencing  
Is JGI Project
No  
Project Information Visibility Public
PROJECT TYPE
Specimen Organism
Nucleic Acid DNA
Sequencing Strategy
Whole Genome Sequencing  
EXTERNAL PROJECT LINKS
JGI Data Utilization Status
  
JGI Award DOI
Genome Publications
  
Other Publications
  
Ignored Publications
  
Unassigned Publications
  
SRA Experiment
 
SRA Experiment Id SRX152438  (Link to NCBI )
Experiment Title Illumina whole genome shotgun sequencing of genomic DNA paired-end library 'Pond-149812' containing sample 'BAA-412' from individual 'Enterococcus phoeniculicola BAA-412'
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection RANDOM
Library Name Pond-149812
Library Layout PAIRED
Library Instrument ILLUMINA_HI_SEQ_2000
Spot Length 202
 
SRA Experiment Id SRX229314  (Link to NCBI )
Experiment Title Pacbio whole genome shotgun sequencing of genomic DNA library 'PACBIO-279' containing sample 'BAA-412' from individual 'Enterococcus phoeniculicola BAA-412'
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection RANDOM
Library Name PACBIO-279
Library Layout SINGLE
Library Instrument PAC_BIO_RS
 
SRA Experiment Id SRX155170  (Link to NCBI )
Experiment Title Illumina whole genome shotgun sequencing of genomic DNA paired-end library 'Solexa-93599' containing sample 'BAA-412' from individual 'Enterococcus phoeniculicola BAA-412'
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection RANDOM
Library Name Solexa-93599
Library Layout PAIRED
Library Instrument ILLUMINA_HI_SEQ_2000
Spot Length 178
 
SRA Experiment Id SRX229080  (Link to NCBI )
Experiment Title Pacbio whole genome shotgun sequencing of genomic DNA library 'PACBIO-279' containing sample 'BAA-412' from individual 'Enterococcus phoeniculicola BAA-412'
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection RANDOM
Library Name PACBIO-279
Library Layout SINGLE
Library Instrument PAC_BIO_RS
PROJECT COMPOSITION
Study Enterococcus phoeniculicola ATCC BAA-412
Organism Enterococcus phoeniculicola ATCC BAA-412
Analysis Projects Enterococcus phoeniculicola ATCC BAA-412
Number of Analysis Projects (AP) 1
Number of Derived Analyis Projects (DAP)
0  
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality (MIGS-31)
Finishing Goal
Contamination Screening Input
  
DNA Amplification Method
  
Single Cell Lysis Protocol
  
Single Cell Lysis Approach
  
Sequencing Comments
  
DNA Amplification Kit
  
Sequencing Technology (MIGS-29) Illumina
Library Method (MIGS-28)
  
Library Layout
  
Library Screening Method
  
Number Of Reads
  
Read Size
  
Vector
  
GC Percent
36  
Chromosome Count
  
Plasmid Count
  
ORGANISM NAME
GOLD Organism ID Go0020596
Organism Name
Enterococcus phoeniculicola ATCC BAA-412  
Other names (alias, synonyms, short names, common names)
  
Organism Domain
BACTERIAL  
Phylogeny
BACILLOTA  
Genus
Enterococcus  
Genus Synonyms
  
Species
Enterococcus phoeniculicola  
Subspecies
  
Species Synonyms
  
Strain
ATCC BAA-412  
Strain Synonyms
  
Serovar/Cultivar
  
Culture Collection ID
ATCC BAA-412  
Type Strain
Yes  
Exemplar DOI
10.1601/ex.5545  
Exemplar Name
Enterococcus phoeniculicola  
Taxon DOI
10.1601/tx.5545  
Biosafety Level
1  
Organism Comments
  
Cultured
Yes  
Culture Type
Isolate  
Organism Type
Natural  
Uncultured Type
  
Commercial Strain
  
Commercial Strain Comments
  
ORGANISM TAXONOMY
NCBI Taxonomy ID 1158610
NCBI Superkingdom
Bacteria  
NCBI Kingdom
  
NCBI Phylum
Bacillota  
NCBI Class
Bacilli  
NCBI Order
Lactobacillales  
NCBI Family
Enterococcaceae  
NCBI Genus
Enterococcus  
NCBI Species
Enterococcus phoeniculicola  
ISOLATION CLASSIFICATION
Ecosystem
Host-associated  
Ecosystem Category
Birds  
Ecosystem Type
Unclassified  
Ecosystem Subtype
Unclassified  
Specific Ecosystem
Unclassified  
ORGANISM EXTERNAL REFERENCES
Strain Info ID
Genbank 16S ID
GENERAL PROPERTIES
Oxygen Requirement
  
Cell Shape
  
Motility
  
Sporulation
  
Temperature Range
  
Salinity
  
pH
  
Cell Diameter
  
Cell Length
  
Color
  
Gram Staining
Gram+  
Biotic Relationships
  
Symbiotic Physical Interaction
  
Symbiotic Relationship
  
Symbiont Name
  
Symbiont Taxon ID
  
Cell Arrangements
  
Diseases
  
Known Habitats
  
Metabolisms
  
Phenotypes
  
Energy Sources Heterotroph

 

 

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