PROJECT NAME
GOLD Project ID
Gp0020548  
Project Name
Pedobacter agri PB92  
Other Names
  
Legacy ER Project ID
9816  
Legacy GOLD ID
Gi16905  
NCBI BioProject Name Pedobacter agri PB92
NCBI BioProject ID 84275
NCBI BioProject Accession
PRJNA84275  
NCBI Locus Tag
  
NCBI BioSample Accession
SAMN02470139  
PI
Added By JGI automated process on 2012-04-04 00:00:00.0
Last Modified By Auto script update processes on 2014-08-18 00:00:00.0
Project Comments
  
PROJECT TYPE
Specimen Organism
Nucleic Acid DNA
Sequencing Strategy
Whole Genome Sequencing  
PROJECT INFORMATION
Project Status
Permanent Draft  
Project Relevance Evolution
Sequencing Center Korea Basic Science Institute (KBSI) (South Korea)
Collaborating Institute
  
Funding Agency
  
Project Description
Pedobacter agri PB92 Genome sequencing  
Project Information Visibility
Public  
EXTERNAL PROJECT LINKS
Project Information
  
Database
  
Genome Publications Journal of bacteriology 194(14):3738 Draft genome sequence of Pedobacter agri PB92T, which belongs to the family Sphingobacteriaceae.
Other Publications
  
Isolation Publications
  
NCBI SRA ID
  
PROJECT COMPOSITION
Studies Pedobacter agri PB92
Analysis Projects Pedobacter agri PB92
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality (MIGS-31)
Finishing Goal
  
Sequencing Comments
  
Sequencing Technology (MIGS-29) 454
Library Method (MIGS-28)
  
Number Of Reads
  
Read Size
  
Vector
  
GC Percent
38  
Chromosome Count
  
Plasmid Count
  
ORGANISM NAME
GOLD Organism ID Go0020548
Organism Name
Pedobacter agri PB92  
Other names (alias, synonyms, short names, common names)
  
Organism Domain
BACTERIAL  
Phylogeny
BACTEROIDETES  
Genus
Pedobacter  
Genus Synonyms
  
Species
Pedobacter agri  
Subspecies
  
Species Synonyms
  
Strain
PB92  
Strain Synonyms
  
Serovar-Biovar
  
Culture Collection ID
  
Type Strain
Yes  
Exemplar DOI
10.1601/ex.13524  
Exemplar Name
Pedobacter agri  
Taxon DOI
10.1601/tx.13524  
Biosafety Level
  
Organism Comments
  
Cultured
Yes  
Culture Type
Isolate  
Organism Type
Natural  
Uncultured Type
  
Commercial Strain
  
Commercial Strain Comments
  
ORGANISM TAXONOMY
NCBI Taxonomy ID 1149865
NCBI Kingdom
  
NCBI Phylum
Bacteroidetes  
NCBI Class
Sphingobacteriia  
NCBI Order
Sphingobacteriales  
NCBI Family
Sphingobacteriaceae  
NCBI Genus
Pedobacter  
NCBI Species
Pedobacter agri  
ISOLATION CLASSIFICATION
Ecosystem
Environmental  
Ecosystem Category
Terrestrial  
Ecosystem Type
Soil  
Ecosystem Subtype
Unclassified  
Specific Ecosystem
Unclassified  
ORGANISM EXTERNAL REFERENCES
Strain Info ID 833408
Genbank 16S ID
Synonym List
  
GENERAL PROPERTIES
Oxygen Requirement
  
Cell Shape
  
Motility
  
Sporulation
  
Temperature Range
  
Temperature Optimum
  
Salinity
  
pH
  
Cell Diameter
  
Cell Length
  
Color
  
Gram Staining
Gram-  
Biotic Relationships
  
Symbiotic Physical Interaction
  
Symbiotic Relationship
  
Symbiont Name
  
Symbiont Taxon ID
  
Cell Arrangements
  
Diseases
  
Known Habitats Soil
Metabolisms
  
Phenotypes
  
Energy Sources
  

 

 

  You are going to add the following user to your project, biosample and study.

 

Contact Name/Email:

Do you want to continue?

 

 

  You are going to remove permissions for the following user to your project, biosample and study.

 

Contact Name/Email:

Do you want to continue?