PROJECT NAME
GOLD Project ID
Gp0018974  
Project Name
Caldimonas manganoxidans ATCC BAA-369  
Other Names
  
Legacy ER Project ID
24102  
Legacy GOLD ID
Gi15293  
NCBI BioProject Name Caldimonas manganoxidans ATCC BAA-369
NCBI BioProject ID 182454
NCBI BioProject Accession
PRJNA182454  
NCBI Locus Tag
F615  
NCBI BioSample Accession
SAMN02440480  
PI Nikos Kyrpides
Added By JGI automated process on 2012-03-02
Last Modified By Auto script update processes on 2014-08-18
Project Comments
  
PROJECT TYPE
Specimen Organism
Nucleic Acid DNA
Sequencing Strategy
Whole Genome Sequencing  
PROJECT INFORMATION
Project Status
Permanent Draft  
Project Relevance GEBA-KMG
Tree of Life
Sequencing Center DOE Joint Genome Institute (JGI) (USA)
Collaborating Institute DOE Joint Genome Institute (JGI) (USA)
Funding Agency U.S. Department of Energy (DOE) (USA)
Project Description
Genomic Encyclopedia of Type Strains, Phase I: one thousand microbial genomes (KMG) project. The goal of the Genomic Encyclopedia of Bacteria and Archaea (GEBA) initiative is to sequence genomes to fill phylogenetic gaps, generating reference genomes for every major and minor group of bacteria and archaea. Currently sequenced genomes have provided highly uneven coverage of the type strain material present in public culture collections. The Microbial Earth Project is an initiative of the Microbial Genomics Program of the DOE Joint Genome Institute that focuses on 1000 Type strains from the DSMZ and ATCC repositories.  
Project Information Visibility
Public  
EXTERNAL PROJECT LINKS
JGI Portal Download Raw Sequence Data
Project Information
  
Database
  
Genome Publications
  
Other Publications
  
PROJECT COMPOSITION
Studies Genomic Encyclopedia of Type Strains, Phase I: the one thousand microbial genomes (KMG-I) project
Analysis Projects Caldimonas manganoxidans ATCC BAA-369
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality (MIGS-31) Level 1: Standard Draft
Finishing Goal Level 1: Standard Draft
Sequencing Comments
  
Sequencing Technology (MIGS-29) Illumina
Illumina HiSeq 2000
Illumina HiSeq 2500
Library Method (MIGS-28)
Illumina Regular Fragment, 270bp  
Number Of Reads
  
Read Size
  
Vector
  
GC Percent
66  
Chromosome Count
  
Plasmid Count
  
ORGANISM NAME
GOLD Organism ID Go0018974
Organism Name
Caldimonas manganoxidans ATCC BAA-369  
Other names (alias, synonyms, short names, common names)
  
Organism Domain
BACTERIAL  
Phylogeny
PROTEOBACTERIA-BETA  
Genus
Caldimonas  
Genus Synonyms
  
Species
Caldimonas manganoxidans  
Subspecies
  
Species Synonyms
  
Strain
ATCC BAA-369  
Strain Synonyms
  
Serovar-Biovar
  
Culture Collection ID
ATCC BAA-369  
Type Strain
Yes  
Exemplar DOI
10.1601/ex.1801  
Exemplar Name
Caldimonas manganoxidans  
Taxon DOI
10.1601/tx.1801  
Biosafety Level
1  
Organism Comments
  
Cultured
Yes  
Culture Type
Isolate  
Organism Type
Natural  
Uncultured Type
  
Commercial Strain
  
Commercial Strain Comments
  
ORGANISM TAXONOMY
NCBI Taxonomy ID 1265502
NCBI Kingdom
  
NCBI Phylum
Proteobacteria  
NCBI Class
Betaproteobacteria  
NCBI Order
Burkholderiales  
NCBI Family
Comamonadaceae  
NCBI Genus
Caldimonas  
NCBI Species
Caldimonas manganoxidans  
ISOLATION CLASSIFICATION
Ecosystem
Environmental  
Ecosystem Category
Aquatic  
Ecosystem Type
Thermal springs  
Ecosystem Subtype
Unclassified  
Specific Ecosystem
Unclassified  
ORGANISM EXTERNAL REFERENCES
Strain Info ID
Genbank 16S ID
Synonym List
  
GENERAL PROPERTIES
Oxygen Requirement
Aerobe  
Cell Shape
  
Motility
  
Sporulation
  
Temperature Range
  
Temperature Optimum
  
Salinity
  
pH
  
Cell Diameter
  
Cell Length
  
Color
  
Gram Staining
Gram-  
Biotic Relationships
  
Symbiotic Physical Interaction
  
Symbiotic Relationship
  
Symbiont Name
  
Symbiont Taxon ID
  
Cell Arrangements
  
Diseases
  
Known Habitats Aquatic
Hot spring
Metabolisms
  
Phenotypes
  
Energy Sources
  

 

 

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