JGI GOLD | Project

PROJECT INFORMATION
GOLD Project ID	Gp0018698
Project Name	Parcubacteria bacterium SCGC AB-164-E21
Other Names
Legacy ER Project ID	24634
Legacy GOLD ID	Gi15109
NCBI BioProject Name	Parcubacteria bacterium SCGC AB-164-E21
NCBI BioProject Accession	PRJNA192299
NCBI Locus Tag	I679
NCBI BioSample Accession	SAMN02441619
Source Sample ID
PI	Tanja Woyke
Added By	Christian Rinke on 2012-03-02
Last Modified By	JGI automated process on 2014-10-31
Project Comments
Project Status	Permanent Draft
Project Relevance	GEBA-Single Cells Microbial Dark Matter
Sequencing Center	DOE Joint Genome Institute (JGI) (USA)
Collaborating Institute	DOE Joint Genome Institute (JGI) (USA)
Funding Agency	U.S. Department of Energy (DOE) (USA)
Project Description
Is JGI Project	Yes
Project Information Visibility	Public
PROJECT TYPE
Specimen	Organism
Nucleic Acid	DNA
Sequencing Strategy	Whole Genome Sequencing
EXTERNAL PROJECT LINKS
JGI Data Utilization Status
JGI Award DOI	10.46936/10.25585/60007503
JGI Portal Download	Raw Sequence Data
Genome Publications	Nature: 499(7459):431-7 Insights into the phylogeny and coding potential of microbial dark matter. PubMed: 23851394 DOI: 10.1038/nature12352
Other Publications
Ignored Publications
Unassigned Publications
SRA Experiment
PROJECT COMPOSITION
Study	GEBA-MDM
Organism	Parcubacteria bacterium SCGC AB-164-E21
Analysis Projects	Parcubacteria bacterium SCGC AB-164-E21 (contamination screened)
Number of Analysis Projects (AP)	1
Number of Derived Analyis Projects (DAP)	0

SEQUENCING INFORMATION
Sequencing Status	Complete
Sequencing Quality (MIGS-31)
Finishing Goal
Contamination Screening Input
DNA Amplification Method
Sorting Technology
Single Cell Lysis Protocol
Single Cell Lysis Approach
Sequencing Comments
DNA Amplification Kit
Sequencing Technology (MIGS-29)	Illumina
Library Method (MIGS-28)
Library Layout
Library Screening Method
Number Of Reads
Read Size
Vector
GC Percent	33
Chromosome Count
Plasmid Count

ORGANISM NAME
GOLD Organism ID	Go0018698
Organism Name	Parcubacteria bacterium SCGC AB-164-E21
Other names (alias, synonyms, short names, common names)
Organism Domain	BACTERIAL
Phylogeny	PARCUBACTERIA
Genus
Genus Synonyms
Species	Parcubacteria bacterium SCGC AB-164-E21
Subspecies
Species Synonyms
Strain	SCGC AB-164-E21
Strain Synonyms
Serovar/Cultivar
Culture Collection ID
Type Strain	Unknown
Exemplar DOI
Exemplar Name
Taxon DOI
Biosafety Level
Organism Comments
Cultured	No
Culture Type
Organism Type	Natural
Uncultured Type	Single Cell
Commercial Strain
Commercial Strain Comments
ORGANISM TAXONOMY
NCBI Taxonomy ID	1104582
NCBI Superkingdom	Bacteria
NCBI Kingdom
NCBI Phylum	Candidatus Parcubacteria
NCBI Class
NCBI Order
NCBI Family
NCBI Genus
NCBI Species	Parcubacteria bacterium SCGC AB-164-E21
ISOLATION CLASSIFICATION
Ecosystem	Environmental
Ecosystem Category	Aquatic
Ecosystem Type	Non-marine Saline and Alkaline
Ecosystem Subtype	Saline
Specific Ecosystem	Unclassified
ORGANISM EXTERNAL REFERENCES
Strain Info ID
Genbank 16S ID

GENERAL PROPERTIES
Oxygen Requirement
Cell Shape
Motility
Sporulation
Temperature Range
Salinity
pH
Cell Diameter
Cell Length
Color
Gram Staining
Biotic Relationships
Symbiotic Physical Interaction
Symbiotic Relationship
Symbiont Name
Symbiont Taxon ID
Cell Arrangements
Diseases
Known Habitats
Metabolisms
Phenotypes
Energy Sources

You are going to add the following user to your project, biosample and study.

Contact Name/Email:

Do you want to continue?

You are going to remove permissions for the following user to your project, biosample and study.

Contact Name/Email:

Do you want to continue?

Changing the SP visibility will also change visibility on the following items:

Do you want to continue with this visibility change?

Checking that this Sequencing Project can be made private:

Do you want to continue with this visibility change?

Changing the SP Sequencing Strategy will also effect these items:

Do you want to continue with this Sequencing Strategy change?