Studies
|
41,042 |
|
Biosamples
|
86,332 |
|
Sequencing Projects
|
322,403 |
|
Analysis Projects
|
267,970 |
| Organisms | 372,105 |
| PROJECT INFORMATION | |
|---|---|
|
GOLD Project ID
|
Gp0018563
|
|
Project Name
|
Methylophilus methylotrophus ATCC 53528
|
|
Other Names
|
|
|
Legacy ER Project ID
|
24277
|
|
Legacy GOLD ID
|
Gi15325
|
| NCBI BioProject Name | Methylophilus methylotrophus DSM 46235 = ATCC 53528 |
|
NCBI BioProject ID
|
181379 |
|
NCBI BioProject Accession
|
PRJNA181379 |
|
NCBI Locus Tag
|
F463
|
|
NCBI BioSample Accession
|
SAMN02440991 |
| PI | Nikos Kyrpides |
| Added By |
JGI automated process
on 2012-03-02 |
| Last Modified By |
JGI automated process
on 2019-09-30 |
| Project Comments |
|
|
Project Status
|
Permanent Draft
|
|
Project Relevance
|
Tree of Life GEBA-KMG |
|
Sequencing Center
|
DOE Joint Genome Institute (JGI)
(USA)
|
|
Collaborating Institute
|
DOE Joint Genome Institute (JGI)
(USA)
|
|
Funding Agency
|
U.S. Department of Energy (DOE)
(USA)
|
|
Project Description
|
Genomic Encyclopedia of Type Strains, Phase I: one thousand microbial genomes (KMG) project. The goal of the Genomic Encyclopedia of Bacteria and Archaea (GEBA) initiative is to sequence genomes to fill phylogenetic gaps, generating reference genomes for every major and minor group of bacteria and archaea. Currently sequenced genomes have provided highly uneven coverage of the type strain material present in public culture collections. The Microbial Earth Project is an initiative of the Microbial Genomics Program of the DOE Joint Genome Institute that focuses on 1000 Type strains from the DSMZ and ATCC repositories.
|
| Is JGI Project |
Yes
|
|
Project Information Visibility
|
Public |
| PROJECT TYPE | |
|
Specimen
|
Organism |
|
Nucleic Acid
|
DNA |
|
Sequencing Strategy
|
Whole Genome Sequencing
|
| EXTERNAL PROJECT LINKS | |
| JGI Portal Download | Raw Sequence Data |
|
Project Information
|
|
|
Database
|
|
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Genome Publications
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Other Publications
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|
| SRA Experiment |
|
| PROJECT COMPOSITION | |
| Study |
Genomic Encyclopedia of Type Strains, Phase I: the one thousand microbial genomes (KMG-I) project |
| Organism |
Methylophilus methylotrophus ATCC 53528 |
| Analysis Projects |
Methylophilus methylotrophus ATCC 53528 |
| Number of Analysis Projects |
1 |
| Number of DAPs |
0
|
| SEQUENCING INFORMATION | |
|---|---|
|
Sequencing Status
|
Complete |
| Sequencing Quality (MIGS-31) |
Level 1: Standard Draft |
|
Finishing Goal
|
Level 1: Standard Draft |
|
Sequencing Comments
|
|
|
Sequencing Technology
(MIGS-29)
|
Illumina Illumina HiSeq 2500 Illumina HiSeq 2000 |
|
Library Method
(MIGS-28)
|
Illumina Regular Fragment, 300bp, Tubes
|
|
Number Of Reads
|
|
|
Read Size
|
|
|
Vector
|
|
| GC Percent |
50
|
| Chromosome Count |
|
| Plasmid Count |
|
| ORGANISM NAME | |
|---|---|
| GOLD Organism ID |
Go0018563 |
| Organism Name |
Methylophilus methylotrophus ATCC 53528
|
| Other names (alias, synonyms, short names, common names) |
|
| Organism Domain |
BACTERIAL
|
| Phylogeny |
PROTEOBACTERIA-BETA
|
| Genus |
Methylophilus
|
| Genus Synonyms |
|
| Species |
Methylophilus methylotrophus
|
| Subspecies |
|
| Species Synonyms |
|
| Strain |
ATCC 53528
|
| Strain Synonyms |
|
| Serovar/Cultivar |
|
| Culture Collection ID |
ATCC 53528
|
| Type Strain |
Yes
|
| Exemplar DOI |
10.1601/ex.1899
|
| Exemplar Name |
Methylophilus methylotrophus
|
| Taxon DOI |
10.1601/tx.1899
|
| Biosafety Level |
1
|
| Organism Comments |
|
| Cultured |
Yes
|
| Culture Type |
Isolate
|
| Organism Type |
Natural
|
| Uncultured Type |
|
| Commercial Strain |
|
| Commercial Strain Comments |
|
|
ORGANISM TAXONOMY
|
|
| NCBI Taxonomy ID |
1122236 |
| NCBI Superkingdom |
Bacteria
|
| NCBI Kingdom |
|
| NCBI Phylum |
Proteobacteria
|
| NCBI Class |
Betaproteobacteria
|
| NCBI Order |
Nitrosomonadales
|
| NCBI Family |
Methylophilaceae
|
| NCBI Genus |
Methylophilus
|
| NCBI Species |
Methylophilus methylotrophus
|
| ISOLATION CLASSIFICATION | |
| Ecosystem |
Engineered
|
| Ecosystem Category |
Wastewater
|
| Ecosystem Type |
Unclassified
|
| Ecosystem Subtype |
Unclassified
|
| Specific Ecosystem |
Unclassified
|
| ORGANISM EXTERNAL REFERENCES | |
| Strain Info ID |
170165 |
| Genbank 16S ID |
|
| GENERAL PROPERTIES | |
|---|---|
| Oxygen Requirement |
Aerobe
|
| Cell Shape |
Rod-shaped
|
| Motility |
Motile
|
| Sporulation |
Nonsporulating
|
| Temperature Range |
Mesophile
|
| Salinity |
|
| pH |
6.5-7.2
|
| Cell Diameter |
0.3-0.6 um
|
| Cell Length |
0.8-1.5 um
|
| Color |
|
| Gram Staining |
Gram-
|
| Biotic Relationships |
|
| Symbiotic Physical Interaction |
|
| Symbiotic Relationship |
|
| Symbiont Name |
|
| Symbiont Taxon ID |
|
| Cell Arrangements |
|
| Diseases |
|
| Known Habitats |
Sludge Wastewater |
| Metabolisms |
|
| Phenotypes |
|
| Energy Sources |
|
| CYANOBACTERIA METADATA | |
| Filaments |
|
| Filament Type |
|
| Differentiated Cells |
|
| Position Of Heterocysts |
|
| Cysts |
|
| Mode Of Reproduction |
|
| Trichome |
|
| Trichome Type |
|
| Carotenoids |
|
| Pigments |
|
| Phage Infectivity |
|
| Phage Type |
|
| Restriction Enzyme |
|
| Toxin Production |
|
| Toxin Type |
|
| Secondary Metabolites |
|
| Developmental Cycle |
|
| Branching |
|
| Gas Vesicles |
|
| Gas Vesicle Type |
|
| Diagnostic Inclusion Body Information |
|
| Extracellular Structures |
|
| Bloom Forming |
|
| Pigment Type |
|
| Complementary chromatic adaptation (CCA) |
|
| Medium Types |
|
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