PROJECT INFORMATION
GOLD Project ID
Gp0018200  
Project Name
Desulfosporosinus sp. Sv. Desulfo HCS1  
Other Names
HCS1  
Legacy ER Project ID
8116  
Legacy GOLD ID
  
NCBI BioProject Name Desulfosporosinus sp. HCS1
NCBI BioProject Accession
NCBI Locus Tag
  
NCBI BioSample Accession
PI Harry Beller
Added By Ulas Karaoz on 2012-02-21
Last Modified By Ionna Pagani on 2012-02-23
Project Comments
  
Project Status
Permanent Draft  
Project Relevance Environmental
Bioremediation
Sequencing Center
  
Collaborating Institute
  
Funding Agency
  
Project Description
Aquifer bacterium isolated from DOE's Hanford 100H site, sequenced to elucidate site biogeochemistry  
Is JGI Project
No  
Project Information Visibility Public
PROJECT TYPE
Specimen Organism
Nucleic Acid DNA
Sequencing Strategy
Whole Genome Sequencing  
EXTERNAL PROJECT LINKS
JGI Data Utilization Status
  
JGI Award DOI
Genome Publications
  
Other Publications
  
Ignored Publications
  
Unassigned Publications
  
SRA Experiment
  
PROJECT COMPOSITION
Study LBNL SBR SFA (Lawrence Berkeley National Lab, Subsurface Biogeochemical Research, Scientific Focus Area)
Organism Desulfosporosinus sp. Sv. Desulfo HCS1
Analysis Projects Desulfosporosinus sp. Sv. Desulfo HCS1
Number of Analysis Projects (AP) 1
Number of Derived Analyis Projects (DAP)
0  
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality (MIGS-31)
Finishing Goal
Contamination Screening Input
  
DNA Amplification Method
  
Single Cell Lysis Protocol
  
Single Cell Lysis Approach
  
Sequencing Comments
  
DNA Amplification Kit
  
Sequencing Technology (MIGS-29) Illumina HiSeq 2000
Library Method (MIGS-28)
  
Library Layout
  
Library Screening Method
  
Number Of Reads
  
Read Size
  
Vector
  
GC Percent
  
Chromosome Count
  
Plasmid Count
  
ORGANISM NAME
GOLD Organism ID Go0018200
Organism Name
Desulfosporosinus sp. Sv. Desulfo HCS1  
Other names (alias, synonyms, short names, common names)
  
Organism Domain
BACTERIAL  
Phylogeny
FIRMICUTES  
Genus
Desulfosporosinus  
Genus Synonyms
  
Species
Desulfosporosinus sp. HCS1  
Subspecies
  
Species Synonyms
  
Strain
HCS1  
Strain Synonyms
  
Serovar/Cultivar
desulfo  
Culture Collection ID
  
Type Strain
No  
Exemplar DOI
  
Exemplar Name
  
Taxon DOI
  
Biosafety Level
  
Organism Comments
  
Cultured
Yes  
Culture Type
Isolate  
Organism Type
Natural  
Uncultured Type
  
Commercial Strain
  
Commercial Strain Comments
  
ORGANISM TAXONOMY
NCBI Taxonomy ID 79206
NCBI Superkingdom
Bacteria  
NCBI Kingdom
  
NCBI Phylum
Firmicutes  
NCBI Class
Clostridia  
NCBI Order
Eubacteriales  
NCBI Family
Desulfitobacteriaceae  
NCBI Genus
Desulfosporosinus  
NCBI Species
  
ISOLATION CLASSIFICATION
Ecosystem
Environmental  
Ecosystem Category
Aquatic  
Ecosystem Type
Sediment  
Ecosystem Subtype
Unclassified  
Specific Ecosystem
Unclassified  
ORGANISM EXTERNAL REFERENCES
Strain Info ID
Genbank 16S ID
GENERAL PROPERTIES
Oxygen Requirement
Anaerobe  
Cell Shape
Rod-shaped  
Motility
  
Sporulation
Sporulating  
Temperature Range
Mesophile  
Salinity
  
pH
  
Cell Diameter
  
Cell Length
  
Color
  
Gram Staining
Gram+  
Biotic Relationships
  
Symbiotic Physical Interaction
  
Symbiotic Relationship
  
Symbiont Name
  
Symbiont Taxon ID
  
Cell Arrangements
  
Diseases
  
Known Habitats Deep subsurface
Metabolisms
  
Phenotypes
  
Energy Sources Heterotroph

 

 

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