Studies
|
49,618 |
|
Biosamples
|
133,254 |
|
Sequencing Projects
|
410,769 |
|
Analysis Projects
|
321,252 |
| Organisms | 410,918 |
| PROJECT INFORMATION | |
|---|---|
|
GOLD Project ID
|
Gp0017128
|
|
Project Name
|
Peptoniphilus grossensis ph5
|
|
Other Names
|
|
|
Legacy ER Project ID
|
8006
|
|
Legacy GOLD ID
|
Gi13722
|
| NCBI BioProject Name | Peptoniphilus grossensis ph5 |
|
NCBI BioProject ID
|
82079 |
|
NCBI BioProject Accession
|
PRJEA82079 |
|
NCBI Locus Tag
|
HGPG
|
|
NCBI BioSample Accession
|
SAMEA2271924 |
| PI | Pierre-Edouard Fournier |
| Added By |
JGI automated process
on 2012-02-02 |
| Last Modified By |
JGI automated process
on 2014-03-26 |
| Project Comments |
|
|
Project Status
|
Permanent Draft
|
|
Project Relevance
|
Human Microbiome Medical |
|
Sequencing Center
|
Aix-Marseille University
(France)
|
|
Collaborating Institute
|
|
|
Funding Agency
|
|
|
Project Description
|
Peptoniphilus sp. ph5 Genome sequencing
|
| Is JGI Project |
No
|
|
Project Information Visibility
|
Public |
| PROJECT TYPE | |
|
Specimen
|
Organism |
|
Nucleic Acid
|
DNA |
|
Sequencing Strategy
|
Whole Genome Sequencing
|
| EXTERNAL PROJECT LINKS | |
|
Project Information
|
|
|
Database
|
|
|
Genome Publications
|
Standards in genomic sciences
7(2):320-30
Non contiguous-finished genome sequence and description of Peptoniphilus grossensis sp. nov.
|
|
Other Publications
|
|
| SRA Experiment |
|
| PROJECT COMPOSITION | |
| Study |
Peptoniphilus sp. ph5 |
| Organism |
Peptoniphilus grossensis ph5 |
| Analysis Projects |
Peptoniphilus grossensis ph5 |
| Number of Analysis Projects (AP) |
1 |
| Number of Derived Analyis Projects (DAP) |
0
|
| SEQUENCING INFORMATION | |
|---|---|
|
Sequencing Status
|
Complete |
| Sequencing Quality (MIGS-31) |
Level 2: High-Quality Draft |
|
Finishing Goal
|
|
|
Contamination Screening Input
|
|
|
DNA Amplification Method
|
|
|
Sequencing Comments
|
|
|
DNA Amplification Kit
|
|
|
Sequencing Technology
(MIGS-29)
|
454 GS FLX Titanium |
|
Library Method
(MIGS-28)
|
One 454 paired end 3-kb library
|
|
Library Layout
|
|
|
Library Screening Method
|
|
|
Number Of Reads
|
|
|
Read Size
|
|
|
Vector
|
|
| GC Percent |
34
|
| Chromosome Count |
|
| Plasmid Count |
|
| ORGANISM NAME | |
|---|---|
| GOLD Organism ID |
Go0017128 |
| Organism Name |
Peptoniphilus grossensis ph5
|
| Other names (alias, synonyms, short names, common names) |
|
| Organism Domain |
BACTERIAL
|
| Phylogeny |
FIRMICUTES
|
| Genus |
Peptoniphilus
|
| Genus Synonyms |
|
| Species |
Peptoniphilus grossensis
|
| Subspecies |
|
| Species Synonyms |
|
| Strain |
ph5
|
| Strain Synonyms |
|
| Serovar/Cultivar |
|
| Culture Collection ID |
DSM 25475
|
| Type Strain |
Yes
|
| Exemplar DOI |
10.1601/ex.24635
|
| Exemplar Name |
Peptoniphilus grossensis
|
| Taxon DOI |
10.1601/tx.24635
|
| Biosafety Level |
|
| Organism Comments |
|
| Cultured |
Yes
|
| Culture Type |
Isolate
|
| Organism Type |
Natural
|
| Uncultured Type |
|
| Commercial Strain |
|
| Commercial Strain Comments |
|
|
ORGANISM TAXONOMY
|
|
| NCBI Taxonomy ID |
1118057 |
| NCBI Superkingdom |
Bacteria
|
| NCBI Kingdom |
|
| NCBI Phylum |
Firmicutes
|
| NCBI Class |
Tissierellia
|
| NCBI Order |
Tissierellales
|
| NCBI Family |
Peptoniphilaceae
|
| NCBI Genus |
Peptoniphilus
|
| NCBI Species |
Peptoniphilus grossensis
|
| ISOLATION CLASSIFICATION | |
| Ecosystem |
Host-associated
|
| Ecosystem Category |
Human
|
| Ecosystem Type |
Digestive system
|
| Ecosystem Subtype |
Large intestine
|
| Specific Ecosystem |
Fecal
|
| ORGANISM EXTERNAL REFERENCES | |
| Strain Info ID |
|
| Genbank 16S ID |
JN837491 |
| GENERAL PROPERTIES | |
|---|---|
| Oxygen Requirement |
Anaerobe
|
| Cell Shape |
|
| Motility |
Nonmotile
|
| Sporulation |
Sporulating
|
| Temperature Range |
Mesophile
|
| Salinity |
|
| pH |
|
| Cell Diameter |
|
| Cell Length |
|
| Color |
|
| Gram Staining |
Gram+
|
| Biotic Relationships | Symbiotic |
| Symbiotic Physical Interaction |
|
| Symbiotic Relationship |
|
| Symbiont Name |
|
| Symbiont Taxon ID |
|
| Cell Arrangements |
|
| Diseases |
|
| Known Habitats |
Host Human fecal Feces |
| Metabolisms |
|
| Phenotypes |
|
| Energy Sources |
|
| CYANOBACTERIA METADATA | |
| Filaments |
|
| Filament Type |
|
| Differentiated Cells |
|
| Position Of Heterocysts |
|
| Cysts |
|
| Mode Of Reproduction |
|
| Trichome |
|
| Trichome Type |
|
| Carotenoids |
|
| Pigments |
|
| Phage Infectivity |
|
| Phage Type |
|
| Restriction Enzyme |
|
| Toxin Production |
|
| Toxin Type |
|
| Secondary Metabolites |
|
| Developmental Cycle |
|
| Branching |
|
| Gas Vesicles |
|
| Gas Vesicle Type |
|
| Diagnostic Inclusion Body Information |
|
| Extracellular Structures |
|
| Bloom Forming |
|
| Pigment Type |
|
| Complementary chromatic adaptation (CCA) |
|
| Medium Types |
|
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