PROJECT NAME
GOLD Project ID
Gp0016733  
Project Name
Aggregatibacter actinomycetemcomitans RhAA1  
Other Names
  
Legacy ER Project ID
7659  
Legacy GOLD ID
Gi13375  
NCBI BioProject Name Aggregatibacter actinomycetemcomitans RhAA1
NCBI BioProject ID 73527
NCBI BioProject Accession
PRJNA73527  
NCBI Locus Tag
RHAA1  
NCBI BioSample Accession
SAMN02471881  
PI Daniel Fine
Added By JGI automated process on 2012-02-02
Last Modified By Auto script update processes on 2014-10-31
Project Comments
  
PROJECT TYPE
Specimen Organism
Nucleic Acid DNA
Sequencing Strategy
Whole Genome Sequencing  
PROJECT INFORMATION
Project Status
Permanent Draft  
Project Relevance Dental Pathogen
Medical
Sequencing Center SeqWright (USA)
Collaborating Institute American Museum of Natural History (USA)
Columbia University (USA)
ANRT (France)
Funding Agency NIH (USA)
Project Description
Aggregatibacter actinomycetemcomitans RhAA1 Genome sequencing  
Project Information Visibility
Public  
EXTERNAL PROJECT LINKS
Project Information
  
Database
  
Genome Publications Journal of bacteriology 194(5):1275-6 Genome sequence of Aggregatibacter actinomycetemcomitans RHAA1, isolated from a rhesus macaque, an Old World primate.
Other Publications
  
Isolation Publications
  
PROJECT COMPOSITION
Studies Aggregatibacter genome sequencing, USC School of Dentistry, USA
Analysis Projects Aggregatibacter actinomycetemcomitans RhAA1
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality (MIGS-31) Level 1: Standard Draft
Finishing Goal
  
Sequencing Comments
  
Sequencing Technology (MIGS-29) 454-GS-FLX-Titanium
Library Method (MIGS-28)
  
Number Of Reads
  
Read Size
  
Vector
  
GC Percent
45  
Chromosome Count
  
Plasmid Count
  
ORGANISM NAME
GOLD Organism ID Go0016733
Organism Name
Aggregatibacter actinomycetemcomitans RhAA1  
Other names (alias, synonyms, short names, common names)
  
Organism Domain
BACTERIAL  
Phylogeny
PROTEOBACTERIA-GAMMA  
Genus
Aggregatibacter  
Genus Synonyms
  
Species
Aggregatibacter actinomycetemcomitans  
Subspecies
  
Species Synonyms
  
Strain
RhAA1  
Strain Synonyms
  
Serovar-Biovar
  
Culture Collection ID
  
Type Strain
Unknown  
Exemplar DOI
  
Exemplar Name
  
Taxon DOI
  
Biosafety Level
  
Organism Comments
  
Cultured
Yes  
Culture Type
Isolate  
Organism Type
Natural  
Uncultured Type
  
Commercial Strain
  
Commercial Strain Comments
  
ORGANISM TAXONOMY
NCBI Taxonomy ID 1089447
NCBI Kingdom
  
NCBI Phylum
Proteobacteria  
NCBI Class
Gammaproteobacteria  
NCBI Order
Pasteurellales  
NCBI Family
Pasteurellaceae  
NCBI Genus
Aggregatibacter  
NCBI Species
Aggregatibacter actinomycetemcomitans  
ISOLATION CLASSIFICATION
Ecosystem
Host-associated  
Ecosystem Category
Animal  
Ecosystem Type
Digestive system  
Ecosystem Subtype
Unclassified  
Specific Ecosystem
Unclassified  
ORGANISM EXTERNAL REFERENCES
Strain Info ID
Genbank 16S ID
Synonym List
  
GENERAL PROPERTIES
Oxygen Requirement
  
Cell Shape
  
Motility
  
Sporulation
  
Temperature Range
  
Temperature Optimum
  
Salinity
  
pH
  
Cell Diameter
  
Cell Length
  
Color
  
Gram Staining
Gram-  
Biotic Relationships
  
Symbiotic Physical Interaction
  
Symbiotic Relationship
  
Symbiont Name
  
Symbiont Taxon ID
  
Cell Arrangements
  
Diseases Periodontitis
Known Habitats
  
Metabolisms
  
Phenotypes
  
Energy Sources
  

 

 

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