PROJECT INFORMATION | |||||||||||||||||||||||||||||||||
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GOLD Project ID
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Gp0016183
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Project Name
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Caldicoprobacter oshimai DSM 21659
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Other Names
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Legacy ER Project ID
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21405
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Legacy GOLD ID
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Gi13781
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NCBI BioProject Name | Caldicoprobacter oshimai DSM 21659 | ||||||||||||||||||||||||||||||||
NCBI BioProject Accession
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PRJNA195830 |
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NCBI Locus Tag
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K363
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NCBI BioSample Accession
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SAMN02584936 |
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Source Sample ID
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PI | Jonathan Eisen | ||||||||||||||||||||||||||||||||
Added By | JGI automated process on 2012-01-27 | ||||||||||||||||||||||||||||||||
Last Modified By | JGI automated process on 2022-09-05 | ||||||||||||||||||||||||||||||||
Project Comments |
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Project Status
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Permanent Draft
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Project Relevance
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Sequencing Center
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DOE Joint Genome Institute (JGI)
(USA)
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Collaborating Institute
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Funding Agency
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U.S. Department of Energy (DOE)
(USA)
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Project Description
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This organism is part of the GEBA (Genomic Encyclopedia of Bacteria and Archaea) initiative to sequence genomes that fill phylogenetic gaps.
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Is JGI Project |
Yes
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Project Information Visibility
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Public | ||||||||||||||||||||||||||||||||
PROJECT TYPE | |||||||||||||||||||||||||||||||||
Specimen
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Organism |
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Nucleic Acid
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DNA |
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Sequencing Strategy
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Whole Genome Sequencing
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EXTERNAL PROJECT LINKS | |||||||||||||||||||||||||||||||||
JGI Data Utilization Status
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Unrestricted
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JGI Award DOI
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10.46936/10.25585/60007347 |
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JGI Portal Download | Raw Sequence Data | ||||||||||||||||||||||||||||||||
Genome Publications
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Nature biotechnology: 35(7):676-683 1,003 reference genomes of bacterial and archaeal isolates expand coverage of the tree of life. PubMed: 28604660 DOI: 10.1038/nbt.3886 |
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Other Publications
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Ignored Publications
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Unassigned Publications
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SRA Experiment |
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PROJECT COMPOSITION | |||||||||||||||||||||||||||||||||
Study |
Continuation of the Genomic Encyclopedia of Bacteria and Archaea pilot project (GEBA) |
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Organism |
Caldicoprobacter oshimai DSM 21659 |
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Analysis Projects |
Caldicoprobacter oshimai DSM 21659 |
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Number of Analysis Projects (AP) |
1 |
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Number of Derived Analyis Projects (DAP) |
0
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SEQUENCING INFORMATION | |
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Sequencing Status
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Complete |
Sequencing Quality (MIGS-31) |
Level 3: Improved-High-Quality Draft |
Finishing Goal
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Level 3: Improved-High-Quality Draft |
Contamination Screening Input
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DNA Amplification Method
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Single Cell Lysis Protocol
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Single Cell Lysis Approach
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Sequencing Comments
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DNA Amplification Kit
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Sequencing Technology
(MIGS-29)
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Illumina HiSeq 2500 |
Library Method
(MIGS-28)
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Library Layout
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Library Screening Method
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Number Of Reads
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Read Size
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Vector
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GC Percent |
45
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Chromosome Count |
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Plasmid Count |
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ORGANISM NAME | |
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GOLD Organism ID |
Go0016183 |
Organism Name |
Caldicoprobacter oshimai DSM 21659
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Other names (alias, synonyms, short names, common names) |
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Organism Domain |
BACTERIAL
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Phylogeny |
BACILLOTA
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Genus |
Caldicoprobacter
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Genus Synonyms |
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Species |
Caldicoprobacter oshimai
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Subspecies |
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Species Synonyms |
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Strain |
DSM 21659
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Strain Synonyms |
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Serovar/Cultivar |
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Culture Collection ID |
DSM 21659
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Type Strain |
Yes
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Exemplar DOI |
10.1601/ex.15036
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Exemplar Name |
Caldicoprobacter oshimai
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Taxon DOI |
10.1601/tx.15036
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Biosafety Level |
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Organism Comments |
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Cultured |
Yes
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Culture Type |
Isolate
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Organism Type |
Natural
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Uncultured Type |
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Commercial Strain |
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Commercial Strain Comments |
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ORGANISM TAXONOMY
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NCBI Taxonomy ID |
1304880 |
NCBI Superkingdom |
Bacteria
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NCBI Kingdom |
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NCBI Phylum |
Bacillota
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NCBI Class |
Clostridia
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NCBI Order |
Eubacteriales
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NCBI Family |
Caldicoprobacteraceae
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NCBI Genus |
Caldicoprobacter
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NCBI Species |
Caldicoprobacter oshimai
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ISOLATION CLASSIFICATION | |
Ecosystem |
Host-associated
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Ecosystem Category |
Mammals
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Ecosystem Type |
Digestive system
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Ecosystem Subtype |
Large intestine
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Specific Ecosystem |
Fecal
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ORGANISM EXTERNAL REFERENCES | |
Strain Info ID |
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Genbank 16S ID |
AB450762 |
GENERAL PROPERTIES | |
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Oxygen Requirement |
Anaerobe
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Cell Shape |
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Motility |
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Sporulation |
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Temperature Range |
Thermophile
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Salinity |
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pH |
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Cell Diameter |
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Cell Length |
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Color |
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Gram Staining |
Gram+
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Biotic Relationships |
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Symbiotic Physical Interaction |
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Symbiotic Relationship |
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Symbiont Name |
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Symbiont Taxon ID |
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Cell Arrangements |
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Diseases |
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Known Habitats |
Host |
Metabolisms |
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Phenotypes |
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Energy Sources |
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