Studies
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56,334 |
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Biosamples
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196,986 |
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Sequencing Projects
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525,358 |
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Analysis Projects
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385,008 |
| Organisms | 484,221 |
| PROJECT INFORMATION | |||||||||||||||||||||||||||||||||
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GOLD Project ID
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Gp0016183
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Project Name
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Caldicoprobacter oshimai DSM 21659
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Other Names
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Legacy ER Project ID
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21405
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Legacy GOLD ID
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Gi13781
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| NCBI BioProject Name | Caldicoprobacter oshimai DSM 21659 | ||||||||||||||||||||||||||||||||
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NCBI BioProject Accession
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PRJNA195830 |
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NCBI Locus Tag
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K363
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NCBI BioSample Accession
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SAMN02584936 |
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Source Sample ID
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| PI | Jonathan Eisen | ||||||||||||||||||||||||||||||||
| Added By | JGI automated process on 2012-01-27 | ||||||||||||||||||||||||||||||||
| Last Modified By | JGI automated process on 2022-09-05 | ||||||||||||||||||||||||||||||||
| Project Comments |
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Project Status
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Permanent Draft
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Project Relevance
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Sequencing Center
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DOE Joint Genome Institute (JGI)
(USA)
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Collaborating Institute
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Funding Agency
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U.S. Department of Energy (DOE)
(USA)
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Project Description
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This organism is part of the GEBA (Genomic Encyclopedia of Bacteria and Archaea) initiative to sequence genomes that fill phylogenetic gaps.
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| Is JGI Project |
Yes
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Project Information Visibility
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Public | ||||||||||||||||||||||||||||||||
| PROJECT TYPE | |||||||||||||||||||||||||||||||||
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Specimen
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Organism |
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Nucleic Acid
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DNA |
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Sequencing Strategy
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Whole Genome Sequencing
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| EXTERNAL PROJECT LINKS | |||||||||||||||||||||||||||||||||
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JGI Data Utilization Status
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Unrestricted
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JGI Award DOI
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10.46936/10.25585/60007347 |
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| JGI Portal Download | Raw Sequence Data | ||||||||||||||||||||||||||||||||
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Genome Publications
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Nature biotechnology: 35(7):676-683 1,003 reference genomes of bacterial and archaeal isolates expand coverage of the tree of life. PubMed: 28604660 DOI: 10.1038/nbt.3886 |
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Other Publications
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Ignored Publications
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Unassigned Publications
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| SRA Experiment |
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| PROJECT COMPOSITION | |||||||||||||||||||||||||||||||||
| Study |
Continuation of the Genomic Encyclopedia of Bacteria and Archaea pilot project (GEBA) |
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| Organism |
Caldicoprobacter oshimai DSM 21659 |
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| Analysis Projects |
Caldicoprobacter oshimai DSM 21659 |
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| Number of Analysis Projects (AP) |
1 |
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| Number of Derived Analyis Projects (DAP) |
0
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| SEQUENCING INFORMATION | |
|---|---|
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Sequencing Status
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Complete |
| Sequencing Quality (MIGS-31) |
Level 3: Improved-High-Quality Draft |
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Finishing Goal
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Level 3: Improved-High-Quality Draft |
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Contamination Screening Input
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DNA Amplification Method
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Single Cell Lysis Protocol
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Single Cell Lysis Approach
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Sequencing Comments
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DNA Amplification Kit
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Sequencing Technology
(MIGS-29)
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Illumina HiSeq 2500 |
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Library Method
(MIGS-28)
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Library Layout
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Library Screening Method
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Number Of Reads
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Read Size
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Vector
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| GC Percent |
45
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| Chromosome Count |
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| Plasmid Count |
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| ORGANISM NAME | |
|---|---|
| GOLD Organism ID |
Go0016183 |
| Organism Name |
Caldicoprobacter oshimai DSM 21659
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| Other names (alias, synonyms, short names, common names) |
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| Organism Domain |
BACTERIAL
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| Phylogeny |
BACILLOTA
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| Genus |
Caldicoprobacter
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| Genus Synonyms |
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| Species |
Caldicoprobacter oshimai
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| Subspecies |
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| Species Synonyms |
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| Strain |
DSM 21659
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| Strain Synonyms |
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| Serovar/Cultivar |
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| Culture Collection ID |
DSM 21659
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| Type Strain |
Yes
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| Exemplar DOI |
10.1601/ex.15036
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| Exemplar Name |
Caldicoprobacter oshimai
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| Taxon DOI |
10.1601/tx.15036
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| Biosafety Level |
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| Organism Comments |
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| Cultured |
Yes
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| Culture Type |
Isolate
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| Organism Type |
Natural
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| Uncultured Type |
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| Commercial Strain |
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| Commercial Strain Comments |
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ORGANISM TAXONOMY
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| NCBI Taxonomy ID |
1304880 |
| NCBI Superkingdom |
Bacteria
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| NCBI Kingdom |
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| NCBI Phylum |
Bacillota
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| NCBI Class |
Clostridia
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| NCBI Order |
Eubacteriales
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| NCBI Family |
Caldicoprobacteraceae
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| NCBI Genus |
Caldicoprobacter
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| NCBI Species |
Caldicoprobacter oshimai
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| ISOLATION CLASSIFICATION | |
| Ecosystem |
Host-associated
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| Ecosystem Category |
Mammals
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| Ecosystem Type |
Digestive system
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| Ecosystem Subtype |
Large intestine
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| Specific Ecosystem |
Fecal
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| ORGANISM EXTERNAL REFERENCES | |
| Strain Info ID |
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| Genbank 16S ID |
AB450762 |
| GENERAL PROPERTIES | |
|---|---|
| Oxygen Requirement |
Anaerobe
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| Cell Shape |
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| Motility |
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| Sporulation |
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| Temperature Range |
Thermophile
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| Salinity |
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| pH |
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| Cell Diameter |
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| Cell Length |
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| Color |
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| Gram Staining |
Gram+
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| Biotic Relationships |
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| Symbiotic Physical Interaction |
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| Symbiotic Relationship |
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| Symbiont Name |
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| Symbiont Taxon ID |
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| Cell Arrangements |
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| Diseases |
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| Known Habitats |
Host |
| Metabolisms |
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| Phenotypes |
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| Energy Sources |
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