PROJECT NAME
GOLD Project ID
Gp0016183  
Project Name
Caldicoprobacter oshimai DSM 21659  
Other Names
  
Legacy ER Project ID
21405  
Legacy GOLD ID
Gi13781  
NCBI BioProject Name Caldicoprobacter oshimai DSM 21659
NCBI BioProject ID 195830
NCBI BioProject Accession
PRJNA195830  
NCBI Locus Tag
K363  
NCBI BioSample Accession
SAMN02584936  
PI Jonathan Eisen
Added By JGI automated process on 2012-01-27
Last Modified By Auto script update processes on 2014-08-18
Project Comments
  
PROJECT TYPE
Specimen Organism
Nucleic Acid DNA
Sequencing Strategy
Whole Genome Sequencing  
PROJECT INFORMATION
Project Status
Permanent Draft  
Project Relevance
  
Sequencing Center DOE Joint Genome Institute (JGI) (USA)
Collaborating Institute
  
Funding Agency U.S. Department of Energy (DOE) (USA)
Project Description
This organism is part of the GEBA (Genomic Encyclopedia of Bacteria and Archaea) initiative to sequence genomes that fill phylogenetic gaps.  
Project Information Visibility
Public  
EXTERNAL PROJECT LINKS
JGI Portal Download Raw Sequence Data
Project Information
  
Database
  
Genome Publications
  
Other Publications
  
Isolation Publications
  
PROJECT COMPOSITION
Studies Continuation of the Genomic Encyclopedia of Bacteria and Archaea pilot project (GEBA)
Analysis Projects Caldicoprobacter oshimai DSM 21659
SEQUENCING INFORMATION
Sequencing Status Draft
Sequencing Quality (MIGS-31) Level 3: Improved-High-Quality Draft
Finishing Goal Level 3: Improved-High-Quality Draft
Sequencing Comments
  
Sequencing Technology (MIGS-29) Illumina HiSeq 2000
Illumina HiSeq 2500
Library Method (MIGS-28)
Illumina Regular LMP, 8kb, CLRS; Illumina Regular LMP, 4kb, CLRS; Illumina Regular Fragment, 270bp  
Number Of Reads
  
Read Size
  
Vector
  
GC Percent
45  
Chromosome Count
  
Plasmid Count
  
ORGANISM NAME
GOLD Organism ID Go0016183
Organism Name
Caldicoprobacter oshimai DSM 21659  
Other names (alias, synonyms, short names, common names)
  
Organism Domain
BACTERIAL  
Phylogeny
FIRMICUTES  
Genus
Caldicoprobacter  
Genus Synonyms
  
Species
Caldicoprobacter oshimai  
Subspecies
  
Species Synonyms
  
Strain
DSM 21659  
Strain Synonyms
  
Serovar-Biovar
  
Culture Collection ID
DSM 21659  
Type Strain
Yes  
Exemplar DOI
10.1601/ex.15036  
Exemplar Name
Caldicoprobacter oshimai  
Taxon DOI
10.1601/tx.15036  
Biosafety Level
  
Organism Comments
  
Cultured
Yes  
Culture Type
Isolate  
Organism Type
Natural  
Uncultured Type
  
Commercial Strain
  
Commercial Strain Comments
  
ORGANISM TAXONOMY
NCBI Taxonomy ID 1304880
NCBI Kingdom
  
NCBI Phylum
Firmicutes  
NCBI Class
Clostridia  
NCBI Order
Clostridiales  
NCBI Family
Caldicoprobacteraceae  
NCBI Genus
Caldicoprobacter  
NCBI Species
Caldicoprobacter oshimai  
ISOLATION CLASSIFICATION
Ecosystem
Host-associated  
Ecosystem Category
Animal  
Ecosystem Type
Digestive system  
Ecosystem Subtype
Fecal  
Specific Ecosystem
Unclassified  
ORGANISM EXTERNAL REFERENCES
Strain Info ID
Genbank 16S ID AB450762
Synonym List
  
GENERAL PROPERTIES
Oxygen Requirement
  
Cell Shape
  
Motility
  
Sporulation
  
Temperature Range
  
Temperature Optimum
  
Salinity
  
pH
  
Cell Diameter
  
Cell Length
  
Color
  
Gram Staining
Gram-  
Biotic Relationships
  
Symbiotic Physical Interaction
  
Symbiotic Relationship
  
Symbiont Name
  
Symbiont Taxon ID
  
Cell Arrangements
  
Diseases
  
Known Habitats Host
Metabolisms
  
Phenotypes
  
Energy Sources
  

 

 

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