PROJECT NAME
GOLD Project ID
Gp0016168  
Project Name
Methylovulum miyakonense HT12  
Other Names
  
Legacy ER Project ID
21927  
Legacy GOLD ID
Gi14072  
NCBI BioProject Name Methylovulum miyakonense HT12
NCBI BioProject ID 86077
NCBI BioProject Accession
PRJNA86077  
NCBI Locus Tag
Metmi  
NCBI BioSample Accession
SAMN02261317  
PI marina kalyuzhnaya
Added By JGI automated process on 2012-01-27
Last Modified By Rida Ali on 2015-07-29
Project Comments
  
PROJECT TYPE
Specimen Organism
Nucleic Acid DNA
Sequencing Strategy
Whole Genome Sequencing  
PROJECT INFORMATION
Project Status
Permanent Draft  
Project Relevance Biotechnological
Sequencing Center DOE Joint Genome Institute (JGI) (USA)
Collaborating Institute
  
Funding Agency U.S. Department of Energy (DOE) (USA)
Project Description
Revising methanotrophy: a comprehensive genomic probing of the unexpected genetic and metabolic diversity of aerobic methane consuming bacteria.  
Project Information Visibility
Public  
EXTERNAL PROJECT LINKS
JGI Portal Download Raw Sequence Data
Project Information
  
Database
  
Genome Publications Genome announcements Draft genomes of gammaproteobacterial methanotrophs isolated from terrestrial ecosystems.
Other Publications
  
PROJECT COMPOSITION
Studies Revising methanotrophy: a comprehensive genomic probing of the unexpected genetic and metabolic diversity of aerobic methane consuming bacteria.
Analysis Projects Methylovulum miyakonense HT12
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality (MIGS-31) Level 3: Improved-High-Quality Draft
Finishing Goal Level 3: Improved-High-Quality Draft
Sequencing Comments
  
Sequencing Technology (MIGS-29) Unknown
Library Method (MIGS-28)
  
Number Of Reads
  
Read Size
  
Vector
  
GC Percent
51  
Chromosome Count
  
Plasmid Count
  
ORGANISM NAME
GOLD Organism ID Go0016168
Organism Name
Methylovulum miyakonense HT12  
Other names (alias, synonyms, short names, common names)
  
Organism Domain
BACTERIAL  
Phylogeny
PROTEOBACTERIA-GAMMA  
Genus
Methylovulum  
Genus Synonyms
  
Species
Methylovulum miyakonense  
Subspecies
  
Species Synonyms
  
Strain
HT12  
Strain Synonyms
  
Serovar-Biovar
  
Culture Collection ID
DSM 23269  
Type Strain
Yes  
Exemplar DOI
10.1601/ex.21313  
Exemplar Name
Methylovulum miyakonense  
Taxon DOI
10.1601/tx.21313  
Biosafety Level
1  
Organism Comments
  
Cultured
Yes  
Culture Type
Isolate  
Organism Type
Natural  
Uncultured Type
  
Commercial Strain
  
Commercial Strain Comments
  
ORGANISM TAXONOMY
NCBI Taxonomy ID 1078846
NCBI Kingdom
  
NCBI Phylum
Proteobacteria  
NCBI Class
Gammaproteobacteria  
NCBI Order
Methylococcales  
NCBI Family
Methylococcaceae  
NCBI Genus
Methylovulum  
NCBI Species
Methylovulum miyakonense  
ISOLATION CLASSIFICATION
Ecosystem
Environmental  
Ecosystem Category
Terrestrial  
Ecosystem Type
Soil  
Ecosystem Subtype
Unclassified  
Specific Ecosystem
Forest soil  
ORGANISM EXTERNAL REFERENCES
Strain Info ID
Genbank 16S ID
Synonym List
  
GENERAL PROPERTIES
Oxygen Requirement
Aerobe  
Cell Shape
  
Motility
Motile  
Sporulation
  
Temperature Range
Mesophile  
Temperature Optimum
24 - 32  
Salinity
  
pH
  
Cell Diameter
  
Cell Length
  
Color
Brown  
Gram Staining
Gram-  
Biotic Relationships
ID 3
Term Free living
Symbiotic Physical Interaction
  
Symbiotic Relationship
  
Symbiont Name
  
Symbiont Taxon ID
  
Cell Arrangements
  
Diseases
  
Known Habitats Soil
Metabolisms
  
Phenotypes
  
Energy Sources Methanotroph

 

 

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