PROJECT INFORMATION
GOLD Project ID
Gp0016067  
Project Name
Bryobacter aggregatus DSM 18758  
Other Names
  
Legacy ER Project ID
21381  
Legacy GOLD ID
Gi13945  
NCBI BioProject Name Bryobacter aggregatus MPL3
NCBI BioProject ID 205962
NCBI BioProject Accession PRJNA205962
NCBI Locus Tag
M017  
NCBI BioSample Accession SAMN02841143
PI Stephanie A. Eichorst
Added By JGI automated process on 2012-01-27
Last Modified By JGI automated process on 2018-10-08
Project Comments
  
Project Status
Permanent Draft  
Project Relevance
  
Sequencing Center DOE Joint Genome Institute (JGI) (USA)
Collaborating Institute DOE Joint Bioenergy Institute (JBEI) (USA)
Funding Agency U.S. Department of Energy (DOE) (USA)
Project Description
  
Is JGI Project
Yes  
Project Information Visibility Public
PROJECT TYPE
Specimen Organism
Nucleic Acid DNA
Sequencing Strategy
Whole Genome Sequencing  
EXTERNAL PROJECT LINKS
JGI Portal Download Raw Sequence Data
Project Information
  
Database
  
Genome Publications
  
Other Publications
  
SRA Experiment
 
SRA Experiment Id SRX1870130
Experiment Title Bryobacter aggregatus DSM 18758
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection RANDOM
Library Name OCAH
Library Layout SINGLE
Library Instrument PAC_BIO_RS
 
SRA Experiment Id SRX1870131
Experiment Title Bryobacter aggregatus DSM 18758
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection RANDOM
Library Name OCAH
Library Layout SINGLE
Library Instrument PAC_BIO_RS
 
SRA Experiment Id SRX1870128
Experiment Title Bryobacter aggregatus DSM 18758
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection RANDOM
Library Name PPOX
Library Layout PAIRED
Library Instrument ILLUMINA_HI_SEQ_2000
 
SRA Experiment Id SRX1870129
Experiment Title Bryobacter aggregatus DSM 18758
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection size fractionation
Library Name PPXY
Library Layout PAIRED
Library Instrument ILLUMINA_HI_SEQ_2500
PROJECT COMPOSITION
Study Populating the branches of the Phylum Acidobacteria with relevant soil strains
Organism Bryobacter aggregatus DSM 18758
Analysis Projects Bryobacter aggregatus DSM 18758
Number of Analysis Projects 1
Number of DAPs
0  
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality (MIGS-31) Level 3: Improved-High-Quality Draft
Finishing Goal Level 3: Improved-High-Quality Draft
Sequencing Comments
  
Sequencing Technology (MIGS-29) PacBio RS
Illumina HiSeq 2500
Illumina HiSeq 2000
PacBio RS II
Library Method (MIGS-28)
Illumina Regular Fragment, 300bp, Tubes; PacBio >10kb w/ AMPure Bead Size Selection, Tubes  
Number Of Reads
  
Read Size
  
Vector
  
GC Percent
58  
Chromosome Count
  
Plasmid Count
  
ORGANISM NAME
GOLD Organism ID Go0016067
Organism Name
Bryobacter aggregatus DSM 18758  
Other names (alias, synonyms, short names, common names)
  
Organism Domain
BACTERIAL  
Phylogeny
ACIDOBACTERIA  
Genus
Bryobacter  
Genus Synonyms
  
Species
Bryobacter aggregatus  
Subspecies
  
Species Synonyms
  
Strain
MPL3  
Strain Synonyms
  
Serovar/Cultivar
  
Culture Collection ID
DSM 18758  
Type Strain
Yes  
Exemplar DOI
10.1601/ex.16888  
Exemplar Name
Bryobacter aggregatus  
Taxon DOI
10.1601/tx.16888  
Biosafety Level
  
Organism Comments
  
Cultured
Yes  
Culture Type
Isolate  
Organism Type
Natural  
Uncultured Type
  
Commercial Strain
  
Commercial Strain Comments
  
ORGANISM TAXONOMY
NCBI Taxonomy ID 1340493
NCBI Superkingdom
Bacteria  
NCBI Kingdom
  
NCBI Phylum
Acidobacteria  
NCBI Class
Acidobacteriia  
NCBI Order
Bryobacterales  
NCBI Family
Bryobacteraceae  
NCBI Genus
Bryobacter  
NCBI Species
Bryobacter aggregatus  
ISOLATION CLASSIFICATION
Ecosystem
Environmental  
Ecosystem Category
Terrestrial  
Ecosystem Type
Soil  
Ecosystem Subtype
Unclassified  
Specific Ecosystem
Unclassified  
ORGANISM EXTERNAL REFERENCES
Strain Info ID
Genbank 16S ID AM162405
GENERAL PROPERTIES
Oxygen Requirement
  
Cell Shape
  
Motility
  
Sporulation
  
Temperature Range
Mesophile  
Salinity
  
pH
  
Cell Diameter
  
Cell Length
  
Color
  
Gram Staining
  
Biotic Relationships
  
Symbiotic Physical Interaction
  
Symbiotic Relationship
  
Symbiont Name
  
Symbiont Taxon ID
  
Cell Arrangements
  
Diseases
  
Known Habitats
  
Metabolisms
  
Phenotypes
  
Energy Sources
  

 

 

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