PROJECT NAME
GOLD Project ID
Gp0015976  
Project Name
Methanocaldococcus villosus KIN24-T80  
Other Names
  
Legacy ER Project ID
21879  
Legacy GOLD ID
Gi12115  
NCBI BioProject Name Methanocaldococcus villosus KIN24-T80
NCBI BioProject ID 82617
NCBI BioProject Accession
PRJNA82617  
NCBI Locus Tag
Metvi  
NCBI BioSample Accession
SAMN02261307  
PI Hans-Peter Klenk
Added By JGI automated process on 2012-01-27
Last Modified By Auto script update processes on 2014-08-18
Project Comments
  
PROJECT TYPE
Specimen Organism
Nucleic Acid DNA
Sequencing Strategy
Whole Genome Sequencing  
PROJECT INFORMATION
Project Status
Permanent Draft  
Project Relevance Tree of Life
Sequencing Center DOE Joint Genome Institute (JGI) (USA)
Collaborating Institute Leibniz Institute (Germany)
Funding Agency Leibniz Institute (Germany)
U.S. Department of Energy (DOE) (USA)
Project Description
Methanocaldococcus villosus KIN24-T80 Genome sequencing  
Project Information Visibility
Public  
EXTERNAL PROJECT LINKS
JGI Portal Download Raw Sequence Data
Project Information
  
Database
  
Genome Publications
  
Other Publications
  
Isolation Publications
  
PROJECT COMPOSITION
Studies Whole genome sequencing of the primary pancreatic cancer cell line JoPaca-1 and BxPC-3
Analysis Projects Methanocaldococcus villosus KIN24-T80
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality (MIGS-31) Level 3: Improved-High-Quality Draft
Finishing Goal Level 2: High-Quality Draft
Sequencing Comments
  
Sequencing Technology (MIGS-29) Illumina HiSeq 2000
Library Method (MIGS-28)
  
Number Of Reads
  
Read Size
  
Vector
  
GC Percent
29  
Chromosome Count
  
Plasmid Count
  
ORGANISM NAME
GOLD Organism ID Go0015976
Organism Name
Methanocaldococcus villosus KIN24-T80  
Other names (alias, synonyms, short names, common names)
  
Organism Domain
ARCHAEAL  
Phylogeny
EURYARCHAEOTA-METHANOCOCCI  
Genus
Methanocaldococcus  
Genus Synonyms
  
Species
Methanocaldococcus villosus  
Subspecies
  
Species Synonyms
  
Strain
KIN24-T80  
Strain Synonyms
  
Serovar-Biovar
  
Culture Collection ID
DSM 22612  
Type Strain
Yes  
Exemplar DOI
10.1601/ex.21791  
Exemplar Name
Methanocaldococcus villosus  
Taxon DOI
10.1601/tx.21791  
Biosafety Level
  
Organism Comments
  
Cultured
Yes  
Culture Type
Isolate  
Organism Type
Natural  
Uncultured Type
  
Commercial Strain
  
Commercial Strain Comments
  
ORGANISM TAXONOMY
NCBI Taxonomy ID 1069083
NCBI Kingdom
  
NCBI Phylum
Euryarchaeota  
NCBI Class
Methanococci  
NCBI Order
Methanococcales  
NCBI Family
Methanocaldococcaceae  
NCBI Genus
Methanocaldococcus  
NCBI Species
Methanocaldococcus villosus  
ISOLATION CLASSIFICATION
Ecosystem
Environmental  
Ecosystem Category
Aquatic  
Ecosystem Type
Marine  
Ecosystem Subtype
Hydrothermal vents  
Specific Ecosystem
Unclassified  
ORGANISM EXTERNAL REFERENCES
Strain Info ID
Genbank 16S ID
Synonym List
GENERAL PROPERTIES
Oxygen Requirement
Anaerobe  
Cell Shape
  
Motility
  
Sporulation
  
Temperature Range
Hyperthermophile  
Temperature Optimum
  
Salinity
  
pH
  
Cell Diameter
  
Cell Length
  
Color
  
Gram Staining
Gram-  
Biotic Relationships
  
Symbiotic Physical Interaction
  
Symbiotic Relationship
  
Symbiont Name
  
Symbiont Taxon ID
  
Cell Arrangements
  
Diseases
  
Known Habitats Sediment
Metabolisms
  
Phenotypes
  
Energy Sources Chemolithoautotroph

 

 

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