PROJECT INFORMATION
GOLD Project ID
Gp0015888  
Project Name
Desulfurobacterium sp. TC5-1  
Other Names
  
Legacy ER Project ID
21522  
Legacy GOLD ID
Gi14063  
NCBI BioProject Name Desulfurobacterium sp. TC5-1
NCBI BioProject ID 187106
NCBI BioProject Accession PRJNA187106
NCBI Locus Tag
H153  
NCBI BioSample Accession SAMN02440891
PI anna-louise reysenbach
Added By JGI automated process on 2012-01-27
Last Modified By JGI automated process on 2019-09-30
Project Comments
  
Project Status
Permanent Draft  
Project Relevance
  
Sequencing Center DOE Joint Genome Institute (JGI) (USA)
Collaborating Institute Portland State University
Funding Agency U.S. Department of Energy (DOE) (USA)
Project Description
Bacterial isolates from the 'uncultivated': new families, genera and species from deep-sea vents  
Is JGI Project
Yes  
Project Information Visibility Public
PROJECT TYPE
Specimen Organism
Nucleic Acid DNA
Sequencing Strategy
Whole Genome Sequencing  
EXTERNAL PROJECT LINKS
JGI Portal Download Raw Sequence Data
Project Information
  
Database
  
Genome Publications
  
Other Publications
  
SRA Experiment
  
PROJECT COMPOSITION
Study Bacterial isolates from the 'uncultivated': new families, genera and species from deep-sea vents
Organism Desulfurobacterium sp. TC5-1
Analysis Projects Desulfurobacterium sp. TC5-1
Number of Analysis Projects 1
Number of DAPs
0  
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality (MIGS-31) Level 3: Improved-High-Quality Draft
Finishing Goal Level 3: Improved-High-Quality Draft
Sequencing Comments
  
Sequencing Technology (MIGS-29) Illumina HiSeq 2500
Illumina HiSeq 2000
Library Method (MIGS-28)
Illumina Regular Fragment, 300bp, Tubes  
Number Of Reads
  
Read Size
  
Vector
  
GC Percent
40  
Chromosome Count
  
Plasmid Count
  
ORGANISM NAME
GOLD Organism ID Go0015888
Organism Name
Desulfurobacterium sp. TC5-1  
Other names (alias, synonyms, short names, common names)
  
Organism Domain
BACTERIAL  
Phylogeny
AQUIFICAE  
Genus
Desulfurobacterium  
Genus Synonyms
  
Species
Desulfurobacterium sp. TC5-1  
Subspecies
  
Species Synonyms
  
Strain
TC5-1  
Strain Synonyms
  
Serovar/Cultivar
  
Culture Collection ID
  
Type Strain
Unknown  
Exemplar DOI
  
Exemplar Name
  
Taxon DOI
  
Biosafety Level
  
Organism Comments
  
Cultured
Yes  
Culture Type
Isolate  
Organism Type
Natural  
Uncultured Type
  
Commercial Strain
  
Commercial Strain Comments
  
ORGANISM TAXONOMY
NCBI Taxonomy ID 1158318
NCBI Superkingdom
Bacteria  
NCBI Kingdom
  
NCBI Phylum
Aquificae  
NCBI Class
Aquificae  
NCBI Order
Desulfurobacteriales  
NCBI Family
Desulfurobacteriaceae  
NCBI Genus
Desulfurobacterium  
NCBI Species
Desulfurobacterium sp. TC5-1  
ISOLATION CLASSIFICATION
Ecosystem
  
Ecosystem Category
  
Ecosystem Type
  
Ecosystem Subtype
  
Specific Ecosystem
  
ORGANISM EXTERNAL REFERENCES
Strain Info ID
Genbank 16S ID
GENERAL PROPERTIES
Oxygen Requirement
  
Cell Shape
  
Motility
  
Sporulation
  
Temperature Range
  
Salinity
  
pH
  
Cell Diameter
  
Cell Length
  
Color
  
Gram Staining
  
Biotic Relationships
  
Symbiotic Physical Interaction
  
Symbiotic Relationship
  
Symbiont Name
  
Symbiont Taxon ID
  
Cell Arrangements
  
Diseases
  
Known Habitats
  
Metabolisms
  
Phenotypes
  
Energy Sources
  

 

 

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