| PROJECT NAME | |
|---|---|
GOLD Project ID
|
Gp0015885
|
|
Project Name
|
Desulfotignum balticum DSM 7044
|
|
Other Names
|
|
|
Legacy ER Project ID
|
21519
|
|
Legacy GOLD ID
|
Gi13788
|
| NCBI BioProject Name | Desulfotignum balticum DSM 7044 |
|
NCBI BioProject ID
|
195832 |
|
NCBI BioProject Accession
|
PRJNA195832 |
|
NCBI Locus Tag
|
K365
|
|
NCBI BioSample Accession
|
SAMN02440581 |
| PI | Eric Collins |
| Added By |
JGI automated process
on 2012-01-27 |
| Last Modified By |
JGI automated process
on 2014-08-18 |
| Project Comments |
|
| PROJECT TYPE | |
|
Specimen
|
Organism |
|
Nucleic Acid
|
DNA |
|
Sequencing Strategy
|
Whole Genome Sequencing
|
| PROJECT INFORMATION | |
|
Project Status
|
Permanent Draft
|
|
Project Relevance
|
Biogeochemical Biotechnological |
|
Sequencing Center
|
DOE Joint Genome Institute (JGI)
(USA)
|
|
Collaborating Institute
|
|
|
Funding Agency
|
U.S. Department of Energy (DOE)
(USA)
|
|
Project Description
|
Unraveling the Genetic Basis of an Ancient Geochemical Biomarker: Sequencing of isolates from the order Desulfobacterales, notable for their ability to use both sulfate and elemental sulfur as terminal electron acceptors.
|
|
Project Information Visibility
|
Public |
| EXTERNAL PROJECT LINKS | |
| JGI Portal Download | Raw Sequence Data |
|
Project Information
|
|
|
Database
|
|
|
Genome Publications
|
|
|
Other Publications
|
|
| PROJECT COMPOSITION | |
| Study |
Unraveling the Genetic Basis of an Ancient Geochemical Biomarker |
| Analysis Projects |
Desulfotignum balticum DSM 7044 |
| SEQUENCING INFORMATION | |
|---|---|
|
Sequencing Status
|
Complete |
|
Sequencing Quality
(MIGS-31)
|
Level 3: Improved-High-Quality Draft |
|
Finishing Goal
|
Level 3: Improved-High-Quality Draft |
|
Sequencing Comments
|
|
|
Sequencing Technology
(MIGS-29)
|
Illumina HiSeq 2500 Illumina HiSeq 2000 |
|
Library Method
(MIGS-28)
|
Illumina Regular Fragment, 270bp; Illumina Regular LMP, 8kb, CLRS
|
|
Number Of Reads
|
|
|
Read Size
|
|
|
Vector
|
|
| GC Percent |
51
|
| Chromosome Count |
|
| Plasmid Count |
|
| ORGANISM NAME | |
|---|---|
| GOLD Organism ID |
Go0015885 |
| Organism Name |
Desulfotignum balticum DSM 7044
|
| Other names (alias, synonyms, short names, common names) |
|
| Organism Domain |
BACTERIAL
|
| Phylogeny |
PROTEOBACTERIA-DELTA
|
| Genus |
Desulfotignum
|
| Genus Synonyms |
|
| Species |
Desulfotignum balticum
|
| Subspecies |
|
| Species Synonyms |
|
| Strain |
DSM 7044
|
| Strain Synonyms |
|
| Serovar-Biovar |
|
| Culture Collection ID |
DSM 7044
|
| Type Strain |
Yes
|
| Exemplar DOI |
10.1601/ex.3592
|
| Exemplar Name |
Desulfotignum balticum
|
| Taxon DOI |
10.1601/tx.3592
|
| Biosafety Level |
|
| Organism Comments |
|
| Cultured |
Yes
|
| Culture Type |
Isolate
|
| Organism Type |
Natural
|
| Uncultured Type |
|
| Commercial Strain |
|
| Commercial Strain Comments |
|
|
ORGANISM TAXONOMY
|
|
| NCBI Taxonomy ID |
1304886 |
| NCBI Superkingdom |
Bacteria
|
| NCBI Kingdom |
|
| NCBI Phylum |
Proteobacteria
|
| NCBI Class |
Deltaproteobacteria
|
| NCBI Order |
Desulfobacterales
|
| NCBI Family |
Desulfobacteraceae
|
| NCBI Genus |
Desulfotignum
|
| NCBI Species |
Desulfotignum balticum
|
| ISOLATION CLASSIFICATION | |
| Ecosystem |
Environmental
|
| Ecosystem Category |
Aquatic
|
| Ecosystem Type |
Marine
|
| Ecosystem Subtype |
Oceanic
|
| Specific Ecosystem |
Sediment
|
| ORGANISM EXTERNAL REFERENCES | |
| Strain Info ID |
|
| Genbank 16S ID |
|
| Synonym List |
|
| GENERAL PROPERTIES | |
|---|---|
| Oxygen Requirement |
|
| Cell Shape |
|
| Motility |
|
| Sporulation |
|
| Temperature Range |
|
| Temperature Optimum |
|
| Salinity |
|
| pH |
|
| Cell Diameter |
|
| Cell Length |
|
| Color |
|
| Gram Staining |
Gram-
|
| Biotic Relationships |
|
| Symbiotic Physical Interaction |
|
| Symbiotic Relationship |
|
| Symbiont Name |
|
| Symbiont Taxon ID |
|
| Cell Arrangements |
|
| Diseases |
|
| Known Habitats |
Mud |
| Metabolisms |
|
| Phenotypes |
|
| Energy Sources |
|
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