Studies
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47,490 |
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Biosamples
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121,670 |
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Sequencing Projects
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389,115 |
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Analysis Projects
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310,404 |
| Organisms | 403,380 |
| PROJECT INFORMATION | |||||||||||||||||||||||||||||||||
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GOLD Project ID
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Gp0015885
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Project Name
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Desulfotignum balticum DSM 7044
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Other Names
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Legacy ER Project ID
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21519
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Legacy GOLD ID
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Gi13788
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| NCBI BioProject Name | Desulfotignum balticum DSM 7044 | ||||||||||||||||||||||||||||||||
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NCBI BioProject ID
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195832 |
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NCBI BioProject Accession
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PRJNA195832 |
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NCBI Locus Tag
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K365
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NCBI BioSample Accession
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SAMN02440581 |
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| PI | Eric Collins | ||||||||||||||||||||||||||||||||
| Added By |
JGI automated process
on 2012-01-27 |
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| Last Modified By |
JGI automated process
on 2021-01-22 |
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| Project Comments |
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Project Status
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Permanent Draft
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Project Relevance
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Biogeochemical Biotechnological |
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Sequencing Center
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DOE Joint Genome Institute (JGI)
(USA)
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Collaborating Institute
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Funding Agency
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U.S. Department of Energy (DOE)
(USA)
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Project Description
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Unraveling the Genetic Basis of an Ancient Geochemical Biomarker: Sequencing of isolates from the order Desulfobacterales, notable for their ability to use both sulfate and elemental sulfur as terminal electron acceptors.
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| Is JGI Project |
Yes
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Project Information Visibility
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Public | ||||||||||||||||||||||||||||||||
| PROJECT TYPE | |||||||||||||||||||||||||||||||||
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Specimen
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Organism |
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Nucleic Acid
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DNA |
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Sequencing Strategy
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Whole Genome Sequencing
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| EXTERNAL PROJECT LINKS | |||||||||||||||||||||||||||||||||
| JGI Portal Download | Raw Sequence Data | ||||||||||||||||||||||||||||||||
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Project Information
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Database
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Genome Publications
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Other Publications
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| SRA Experiment |
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| PROJECT COMPOSITION | |||||||||||||||||||||||||||||||||
| Study |
Unraveling the Genetic Basis of an Ancient Geochemical Biomarker |
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| Organism |
Desulfotignum balticum DSM 7044 |
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| Analysis Projects |
Desulfotignum balticum DSM 7044 |
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| Number of Analysis Projects (AP) |
1
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| Number of Derived Analyis Projects (DAP) |
0
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| SEQUENCING INFORMATION | |
|---|---|
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Sequencing Status
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Complete |
| Sequencing Quality (MIGS-31) |
Level 3: Improved-High-Quality Draft |
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Finishing Goal
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Level 3: Improved-High-Quality Draft |
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Contamination Screening Input
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DNA Amplification Method
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Sequencing Comments
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DNA Amplification Kit
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Sequencing Technology
(MIGS-29)
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Illumina HiSeq 2500 Illumina HiSeq 2000 |
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Library Method
(MIGS-28)
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Illumina Regular Fragment, 300bp, Tubes
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Library Layout
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Library Screening Method
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Number Of Reads
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Read Size
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Vector
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| GC Percent |
51
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| Chromosome Count |
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| Plasmid Count |
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| ORGANISM NAME | |
|---|---|
| GOLD Organism ID |
Go0015885 |
| Organism Name |
Desulfotignum balticum DSM 7044
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| Other names (alias, synonyms, short names, common names) |
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| Organism Domain |
BACTERIAL
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| Phylogeny |
PROTEOBACTERIA-DELTA
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| Genus |
Desulfotignum
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| Genus Synonyms |
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| Species |
Desulfotignum balticum
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| Subspecies |
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| Species Synonyms |
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| Strain |
DSM 7044
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| Strain Synonyms |
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| Serovar/Cultivar |
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| Culture Collection ID |
DSM 7044
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| Type Strain |
Yes
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| Exemplar DOI |
10.1601/ex.3592
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| Exemplar Name |
Desulfotignum balticum
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| Taxon DOI |
10.1601/tx.3592
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| Biosafety Level |
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| Organism Comments |
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| Cultured |
Yes
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| Culture Type |
Isolate
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| Organism Type |
Natural
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| Uncultured Type |
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| Commercial Strain |
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| Commercial Strain Comments |
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ORGANISM TAXONOMY
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| NCBI Taxonomy ID |
1304886 |
| NCBI Superkingdom |
Bacteria
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| NCBI Kingdom |
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| NCBI Phylum |
Proteobacteria
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| NCBI Class |
Deltaproteobacteria
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| NCBI Order |
Desulfobacterales
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| NCBI Family |
Desulfobacteraceae
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| NCBI Genus |
Desulfotignum
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| NCBI Species |
Desulfotignum balticum
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| ISOLATION CLASSIFICATION | |
| Ecosystem |
Environmental
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| Ecosystem Category |
Aquatic
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| Ecosystem Type |
Marine
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| Ecosystem Subtype |
Oceanic
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| Specific Ecosystem |
Sediment
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| ORGANISM EXTERNAL REFERENCES | |
| Strain Info ID |
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| Genbank 16S ID |
AF418176 |
| GENERAL PROPERTIES | |
|---|---|
| Oxygen Requirement |
Anaerobe
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| Cell Shape |
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| Motility |
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| Sporulation |
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| Temperature Range |
Mesophile
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| Salinity |
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| pH |
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| Cell Diameter |
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| Cell Length |
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| Color |
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| Gram Staining |
Gram-
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| Biotic Relationships |
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| Symbiotic Physical Interaction |
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| Symbiotic Relationship |
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| Symbiont Name |
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| Symbiont Taxon ID |
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| Cell Arrangements |
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| Diseases |
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| Known Habitats |
Mud |
| Metabolisms |
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| Phenotypes |
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| Energy Sources |
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