PROJECT INFORMATION | |||||||||||||||||||||||||||||||||
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GOLD Project ID
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Gp0015885
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Project Name
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Desulfotignum balticum DSM 7044
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Other Names
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Legacy ER Project ID
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21519
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Legacy GOLD ID
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Gi13788
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NCBI BioProject Name | Desulfotignum balticum DSM 7044 | ||||||||||||||||||||||||||||||||
NCBI BioProject ID
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195832 |
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NCBI BioProject Accession
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PRJNA195832 |
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NCBI Locus Tag
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K365
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NCBI BioSample Accession
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SAMN02440581 |
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PI | Eric Collins | ||||||||||||||||||||||||||||||||
Added By |
JGI automated process
on 2012-01-27 |
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Last Modified By |
JGI automated process
on 2021-01-22 |
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Project Comments |
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Project Status
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Permanent Draft
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Project Relevance
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Biogeochemical Biotechnological |
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Sequencing Center
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DOE Joint Genome Institute (JGI)
(USA)
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Collaborating Institute
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Funding Agency
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U.S. Department of Energy (DOE)
(USA)
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Project Description
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Unraveling the Genetic Basis of an Ancient Geochemical Biomarker: Sequencing of isolates from the order Desulfobacterales, notable for their ability to use both sulfate and elemental sulfur as terminal electron acceptors.
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Is JGI Project |
Yes
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Project Information Visibility
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Public | ||||||||||||||||||||||||||||||||
PROJECT TYPE | |||||||||||||||||||||||||||||||||
Specimen
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Organism |
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Nucleic Acid
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DNA |
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Sequencing Strategy
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Whole Genome Sequencing
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EXTERNAL PROJECT LINKS | |||||||||||||||||||||||||||||||||
JGI Portal Download | Raw Sequence Data | ||||||||||||||||||||||||||||||||
Project Information
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Database
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Genome Publications
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Other Publications
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SRA Experiment |
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PROJECT COMPOSITION | |||||||||||||||||||||||||||||||||
Study |
Unraveling the Genetic Basis of an Ancient Geochemical Biomarker |
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Organism |
Desulfotignum balticum DSM 7044 |
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Analysis Projects |
Desulfotignum balticum DSM 7044 |
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Number of Analysis Projects (AP) |
1
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Number of Derived Analyis Projects (DAP) |
0
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SEQUENCING INFORMATION | |
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Sequencing Status
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Complete |
Sequencing Quality (MIGS-31) |
Level 3: Improved-High-Quality Draft |
Finishing Goal
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Level 3: Improved-High-Quality Draft |
Contamination Screening Input
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DNA Amplification Method
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Sequencing Comments
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DNA Amplification Kit
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Sequencing Technology
(MIGS-29)
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Illumina HiSeq 2500 Illumina HiSeq 2000 |
Library Method
(MIGS-28)
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Illumina Regular Fragment, 300bp, Tubes
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Library Layout
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Library Screening Method
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Number Of Reads
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Read Size
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Vector
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GC Percent |
51
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Chromosome Count |
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Plasmid Count |
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ORGANISM NAME | |
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GOLD Organism ID |
Go0015885 |
Organism Name |
Desulfotignum balticum DSM 7044
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Other names (alias, synonyms, short names, common names) |
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Organism Domain |
BACTERIAL
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Phylogeny |
PROTEOBACTERIA-DELTA
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Genus |
Desulfotignum
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Genus Synonyms |
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Species |
Desulfotignum balticum
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Subspecies |
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Species Synonyms |
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Strain |
DSM 7044
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Strain Synonyms |
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Serovar/Cultivar |
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Culture Collection ID |
DSM 7044
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Type Strain |
Yes
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Exemplar DOI |
10.1601/ex.3592
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Exemplar Name |
Desulfotignum balticum
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Taxon DOI |
10.1601/tx.3592
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Biosafety Level |
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Organism Comments |
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Cultured |
Yes
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Culture Type |
Isolate
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Organism Type |
Natural
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Uncultured Type |
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Commercial Strain |
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Commercial Strain Comments |
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ORGANISM TAXONOMY
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NCBI Taxonomy ID |
1304886 |
NCBI Superkingdom |
Bacteria
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NCBI Kingdom |
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NCBI Phylum |
Proteobacteria
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NCBI Class |
Deltaproteobacteria
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NCBI Order |
Desulfobacterales
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NCBI Family |
Desulfobacteraceae
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NCBI Genus |
Desulfotignum
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NCBI Species |
Desulfotignum balticum
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ISOLATION CLASSIFICATION | |
Ecosystem |
Environmental
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Ecosystem Category |
Aquatic
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Ecosystem Type |
Marine
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Ecosystem Subtype |
Oceanic
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Specific Ecosystem |
Sediment
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ORGANISM EXTERNAL REFERENCES | |
Strain Info ID |
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Genbank 16S ID |
AF418176 |
GENERAL PROPERTIES | |
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Oxygen Requirement |
Anaerobe
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Cell Shape |
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Motility |
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Sporulation |
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Temperature Range |
Mesophile
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Salinity |
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pH |
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Cell Diameter |
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Cell Length |
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Color |
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Gram Staining |
Gram-
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Biotic Relationships |
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Symbiotic Physical Interaction |
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Symbiotic Relationship |
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Symbiont Name |
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Symbiont Taxon ID |
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Cell Arrangements |
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Diseases |
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Known Habitats |
Mud |
Metabolisms |
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Phenotypes |
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Energy Sources |
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