PROJECT NAME
GOLD Project ID
Gp0015884  
Project Name
Desulfospira joergensenii DSM 10085  
Other Names
  
Legacy ER Project ID
21518  
Legacy GOLD ID
Gi13787  
NCBI BioProject Name Desulfospira joergensenii DSM 10085
NCBI BioProject ID 182447
NCBI BioProject Accession
PRJNA182447  
NCBI Locus Tag
F608  
NCBI BioSample Accession
SAMN02440566  
PI Eric Collins
Added By JGI automated process on 2012-01-27
Last Modified By Auto script update processes on 2014-08-18
Project Comments
  
PROJECT TYPE
Specimen Organism
Nucleic Acid DNA
Sequencing Strategy
Whole Genome Sequencing  
PROJECT INFORMATION
Project Status
Permanent Draft  
Project Relevance
  
Sequencing Center DOE Joint Genome Institute (JGI) (USA)
Collaborating Institute
  
Funding Agency U.S. Department of Energy (DOE) (USA)
Project Description
Unraveling the Genetic Basis of an Ancient Geochemical Biomarker: Sequencing of isolates from the order Desulfobacterales, notable for their ability to use both sulfate and elemental sulfur as terminal electron acceptors.  
Project Information Visibility
Public  
EXTERNAL PROJECT LINKS
JGI Portal Download Raw Sequence Data
Project Information
  
Database
  
Genome Publications
  
Other Publications
  
PROJECT COMPOSITION
Studies Unraveling the Genetic Basis of an Ancient Geochemical Biomarker
Analysis Projects Desulfospira joergensenii DSM 10085
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality (MIGS-31) Level 3: Improved-High-Quality Draft
Finishing Goal Level 3: Improved-High-Quality Draft
Sequencing Comments
  
Sequencing Technology (MIGS-29) Illumina HiSeq 2000
Illumina HiSeq 2500
Library Method (MIGS-28)
Illumina Regular Fragment, 270bp; Illumina Regular LMP, 8kb, CLRS  
Number Of Reads
  
Read Size
  
Vector
  
GC Percent
51  
Chromosome Count
  
Plasmid Count
  
ORGANISM NAME
GOLD Organism ID Go0015884
Organism Name
Desulfospira joergensenii DSM 10085  
Other names (alias, synonyms, short names, common names)
  
Organism Domain
BACTERIAL  
Phylogeny
PROTEOBACTERIA-DELTA  
Genus
Desulfospira  
Genus Synonyms
  
Species
Desulfospira joergensenii  
Subspecies
  
Species Synonyms
  
Strain
DSM 10085  
Strain Synonyms
  
Serovar-Biovar
  
Culture Collection ID
DSM 10085  
Type Strain
Yes  
Exemplar DOI
10.1601/ex.3590  
Exemplar Name
Desulfospira joergensenii  
Taxon DOI
10.1601/tx.3590  
Biosafety Level
  
Organism Comments
  
Cultured
Yes  
Culture Type
Isolate  
Organism Type
Natural  
Uncultured Type
  
Commercial Strain
  
Commercial Strain Comments
  
ORGANISM TAXONOMY
NCBI Taxonomy ID 1265505
NCBI Kingdom
  
NCBI Phylum
Proteobacteria  
NCBI Class
Deltaproteobacteria  
NCBI Order
Desulfobacterales  
NCBI Family
Desulfobacteraceae  
NCBI Genus
Desulfospira  
NCBI Species
Desulfospira joergensenii  
ISOLATION CLASSIFICATION
Ecosystem
Environmental  
Ecosystem Category
Aquatic  
Ecosystem Type
Marine  
Ecosystem Subtype
Coastal  
Specific Ecosystem
Sediment  
ORGANISM EXTERNAL REFERENCES
Strain Info ID
Genbank 16S ID
Synonym List
  
GENERAL PROPERTIES
Oxygen Requirement
  
Cell Shape
  
Motility
  
Sporulation
  
Temperature Range
  
Temperature Optimum
  
Salinity
  
pH
  
Cell Diameter
  
Cell Length
  
Color
  
Gram Staining
Gram-  
Biotic Relationships
  
Symbiotic Physical Interaction
  
Symbiotic Relationship
  
Symbiont Name
  
Symbiont Taxon ID
  
Cell Arrangements
  
Diseases
  
Known Habitats Aquatic
Marine
Sediment
Metabolisms
  
Phenotypes
  
Energy Sources
  

 

 

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