PROJECT NAME
GOLD Project ID
Gp0015680  
Project Name
Pyrobaculum calidifontis VA1 JCM 11548, A1  
Other Names
  
Legacy ER Project ID
21270  
Legacy GOLD ID
Gr00471  
NCBI BioProject Name Pyrobaculum calidifontis VA1 JCM 11548, A1
NCBI BioProject ID 337254
NCBI BioProject Accession
PRJNA337254  
NCBI Locus Tag
BE187  
NCBI BioSample Accession
SAMN05519280  
PI Todd Lowe
Added By JGI automated process on 2012-01-27
Last Modified By Auto script update processes on 2014-05-20
Project Comments
  
PROJECT TYPE
Specimen Organism
Nucleic Acid DNA
Sequencing Strategy
Resequencing  
PROJECT INFORMATION
Project Status
incomplete  
Project Relevance
  
Sequencing Center DOE Joint Genome Institute (JGI) (USA)
Collaborating Institute University of California, Santa Cruz (USA)
Funding Agency U.S. Department of Energy (DOE) (USA)
Project Description
  
Project Information Visibility
Public  
EXTERNAL PROJECT LINKS
JGI Portal Download Raw Sequence Data
Project Information
  
Database
  
Genome Publications
  
Other Publications
  
Isolation Publications
  
NCBI SRA ID
  
PROJECT COMPOSITION
Studies Experimental genome evolution in the physiologically versatile, hyperthermophilic crenarchaeal genus Pyrobaculum
Analysis Projects
  
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality (MIGS-31)
Finishing Goal
  
Sequencing Comments
  
Sequencing Technology (MIGS-29)
  
Library Method (MIGS-28)
  
Number Of Reads
  
Read Size
  
Vector
  
GC Percent
  
Chromosome Count
  
Plasmid Count
  
ORGANISM NAME
GOLD Organism ID Go0015680
Organism Name
Pyrobaculum calidifontis VA1 JCM 11548, A1  
Other names (alias, synonyms, short names, common names)
  
Organism Domain
ARCHAEAL  
Phylogeny
CRENARCHAEOTA-THERMOPROTEI  
Genus
Pyrobaculum  
Genus Synonyms
  
Species
Pyrobaculum calidifontis  
Subspecies
  
Species Synonyms
  
Strain
VA1  
Strain Synonyms
  
Serovar-Biovar
  
Culture Collection ID
JCM 11548  
Type Strain
Yes  
Exemplar DOI
10.1601/ex.13561  
Exemplar Name
Pyrobaculum calidifontis  
Taxon DOI
10.1601/tx.13561  
Biosafety Level
  
Organism Comments
  
Cultured
Yes  
Culture Type
Isolate  
Organism Type
Natural  
Uncultured Type
  
Commercial Strain
  
Commercial Strain Comments
  
ORGANISM TAXONOMY
NCBI Taxonomy ID 410359
NCBI Kingdom
  
NCBI Phylum
Crenarchaeota  
NCBI Class
Thermoprotei  
NCBI Order
Thermoproteales  
NCBI Family
Thermoproteaceae  
NCBI Genus
Pyrobaculum  
NCBI Species
Pyrobaculum calidifontis  
ISOLATION CLASSIFICATION
Ecosystem
  
Ecosystem Category
  
Ecosystem Type
  
Ecosystem Subtype
  
Specific Ecosystem
  
ORGANISM EXTERNAL REFERENCES
Strain Info ID 556407
Genbank 16S ID AB078332
Synonym List
GENERAL PROPERTIES
Oxygen Requirement
Facultative  
Cell Shape
Rod-shaped  
Motility
Motile  
Sporulation
Nonsporulating  
Temperature Range
Hyperthermophile  
Temperature Optimum
90 - 95  
Salinity
  
pH
  
Cell Diameter
  
Cell Length
  
Color
  
Gram Staining
Gram-  
Biotic Relationships
ID 3
Term Free living
Symbiotic Physical Interaction
  
Symbiotic Relationship
  
Symbiont Name
  
Symbiont Taxon ID
  
Cell Arrangements
  
Diseases
  
Known Habitats
  
Metabolisms
  
Phenotypes
  
Energy Sources
  

 

 

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