Studies
|
56,336 |
|
Biosamples
|
196,965 |
|
Sequencing Projects
|
525,338 |
|
Analysis Projects
|
385,100 |
| Organisms | 484,222 |
| PROJECT INFORMATION | |||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
GOLD Project ID
|
Gp0015085
|
||||||||||||||||
|
Project Name
|
Thermonema rossianum DSM 10300
|
||||||||||||||||
|
Other Names
|
|
||||||||||||||||
|
Legacy ER Project ID
|
22616
|
||||||||||||||||
|
Legacy GOLD ID
|
Gi13796
|
||||||||||||||||
| NCBI BioProject Name | Thermonema rossianum DSM 10300 | ||||||||||||||||
|
NCBI BioProject Accession
|
PRJNA195851 |
||||||||||||||||
|
NCBI Locus Tag
|
K384
|
||||||||||||||||
|
NCBI BioSample Accession
|
SAMN02440846 |
||||||||||||||||
|
Source Sample ID
|
|
||||||||||||||||
| PI | Jonathan Eisen | ||||||||||||||||
| Added By | JGI automated process on 2012-01-27 | ||||||||||||||||
| Last Modified By | JGI automated process on 2022-09-05 | ||||||||||||||||
| Project Comments |
|
||||||||||||||||
|
Project Status
|
Permanent Draft
|
||||||||||||||||
|
Project Relevance
|
Tree of Life GEBA |
||||||||||||||||
|
Sequencing Center
|
DOE Joint Genome Institute (JGI)
(USA)
|
||||||||||||||||
|
Collaborating Institute
|
|
||||||||||||||||
|
Funding Agency
|
U.S. Department of Energy (DOE)
(USA)
|
||||||||||||||||
|
Project Description
|
|
||||||||||||||||
| Is JGI Project |
Yes
|
||||||||||||||||
|
Project Information Visibility
|
Public | ||||||||||||||||
| PROJECT TYPE | |||||||||||||||||
|
Specimen
|
Organism |
||||||||||||||||
|
Nucleic Acid
|
DNA |
||||||||||||||||
|
Sequencing Strategy
|
Whole Genome Sequencing
|
||||||||||||||||
| EXTERNAL PROJECT LINKS | |||||||||||||||||
|
JGI Data Utilization Status
|
Unrestricted
|
||||||||||||||||
|
JGI Award DOI
|
10.46936/10.25585/60007347 |
||||||||||||||||
| JGI Portal Download | Raw Sequence Data | ||||||||||||||||
|
Genome Publications
|
Nature biotechnology: 35(7):676-683 1,003 reference genomes of bacterial and archaeal isolates expand coverage of the tree of life. PubMed: 28604660 DOI: 10.1038/nbt.3886 |
||||||||||||||||
|
Other Publications
|
|
||||||||||||||||
|
Ignored Publications
|
|
||||||||||||||||
|
Unassigned Publications
|
|
||||||||||||||||
| SRA Experiment |
|
||||||||||||||||
| PROJECT COMPOSITION | |||||||||||||||||
| Study |
Continuation of the Genomic Encyclopedia of Bacteria and Archaea pilot project (GEBA) |
||||||||||||||||
| Organism |
Thermonema rossianum DSM 10300 |
||||||||||||||||
| Analysis Projects |
Thermonema rossianum DSM 10300 |
||||||||||||||||
| Number of Analysis Projects (AP) |
1 |
||||||||||||||||
| Number of Derived Analyis Projects (DAP) |
0
|
||||||||||||||||
| SEQUENCING INFORMATION | |
|---|---|
|
Sequencing Status
|
Complete |
| Sequencing Quality (MIGS-31) |
Level 3: Improved-High-Quality Draft |
|
Finishing Goal
|
Level 3: Improved-High-Quality Draft |
|
Contamination Screening Input
|
|
|
DNA Amplification Method
|
|
|
Single Cell Lysis Protocol
|
|
|
Single Cell Lysis Approach
|
|
|
Sequencing Comments
|
|
|
DNA Amplification Kit
|
|
|
Sequencing Technology
(MIGS-29)
|
Illumina HiSeq 2500 |
|
Library Method
(MIGS-28)
|
|
|
Library Layout
|
|
|
Library Screening Method
|
|
|
Number Of Reads
|
|
|
Read Size
|
|
|
Vector
|
|
| GC Percent |
49
|
| Chromosome Count |
|
| Plasmid Count |
|
| ORGANISM NAME | |
|---|---|
| GOLD Organism ID |
Go0015085 |
| Organism Name |
Thermonema rossianum DSM 10300
|
| Other names (alias, synonyms, short names, common names) |
|
| Organism Domain |
BACTERIAL
|
| Phylogeny |
BACTEROIDOTA
|
| Genus |
Thermonema
|
| Genus Synonyms |
|
| Species |
Thermonema rossianum
|
| Subspecies |
|
| Species Synonyms |
|
| Strain |
DSM 10300
|
| Strain Synonyms |
|
| Serovar/Cultivar |
|
| Culture Collection ID |
DSM 10300
|
| Type Strain |
Yes
|
| Exemplar DOI |
10.1601/ex.8330
|
| Exemplar Name |
Thermonema rossianum
|
| Taxon DOI |
10.1601/tx.8330
|
| Biosafety Level |
|
| Organism Comments |
|
| Cultured |
Yes
|
| Culture Type |
Isolate
|
| Organism Type |
Natural
|
| Uncultured Type |
|
| Commercial Strain |
|
| Commercial Strain Comments |
|
|
ORGANISM TAXONOMY
|
|
| NCBI Taxonomy ID |
1313301 |
| NCBI Superkingdom |
Bacteria
|
| NCBI Kingdom |
|
| NCBI Phylum |
Bacteroidota
|
| NCBI Class |
Cytophagia
|
| NCBI Order |
Cytophagales
|
| NCBI Family |
Thermonemataceae
|
| NCBI Genus |
Thermonema
|
| NCBI Species |
Thermonema rossianum
|
| ISOLATION CLASSIFICATION | |
| Ecosystem |
Environmental
|
| Ecosystem Category |
Aquatic
|
| Ecosystem Type |
Thermal springs
|
| Ecosystem Subtype |
Unclassified
|
| Specific Ecosystem |
Unclassified
|
| ORGANISM EXTERNAL REFERENCES | |
| Strain Info ID |
|
| Genbank 16S ID |
Y08956 |
| GENERAL PROPERTIES | |
|---|---|
| Oxygen Requirement |
|
| Cell Shape |
|
| Motility |
|
| Sporulation |
|
| Temperature Range |
Thermophile
|
| Salinity |
Halophile
|
| pH |
|
| Cell Diameter |
|
| Cell Length |
|
| Color |
Yellow
|
| Gram Staining |
Gram-
|
| Biotic Relationships | Free living |
| Symbiotic Physical Interaction |
|
| Symbiotic Relationship |
|
| Symbiont Name |
|
| Symbiont Taxon ID |
|
| Cell Arrangements |
|
| Diseases |
|
| Known Habitats |
Hot spring Saline water |
| Metabolisms |
|
| Phenotypes |
|
| Energy Sources |
|
You are going to add the following user to your project, biosample and study.
Contact Name/Email: Do you want to continue?
You are going to remove permissions for the following user to your project, biosample and study.
Contact Name/Email: Do you want to continue?
Changing the SP visibility will also change visibility on the following items:
Do you want to continue with this visibility change?
Checking that this Sequencing Project can be made private:
Do you want to continue with this visibility change?
Changing the SP Sequencing Strategy will also effect these items:
Do you want to continue with this Sequencing Strategy change?
