PROJECT INFORMATION
GOLD Project ID
Gp0015082  
Project Name
Thermocrinis ruber DSM 23557  
Other Names
  
Legacy ER Project ID
22613  
Legacy GOLD ID
Gc0022613, Gc0022613  
NCBI BioProject Name Thermocrinis ruber strain:DSM 23557
NCBI BioProject ID 75073
NCBI BioProject Accession PRJNA75073
NCBI Locus Tag
Theru  
NCBI BioSample Accession SAMN02769647
PI Jonathan Eisen
Added By JGI automated process on 2012-01-27
Last Modified By Supratim Mukherjee on 2017-03-17
Project Comments
  
Project Status
Complete and Published  
Project Relevance Tree of Life
GEBA
Sequencing Center DOE Joint Genome Institute (JGI) (USA)
Collaborating Institute Leibniz Institute (Germany)
Funding Agency U.S. Department of Energy (DOE) (USA)
Leibniz Institute (Germany)
Project Description
Thermocrinis ruber DSM 23557 Genome sequencing  
Is JGI Project
Yes  
Project Information Visibility Public
PROJECT TYPE
Specimen Organism
Nucleic Acid DNA
Sequencing Strategy
Whole Genome Sequencing  
EXTERNAL PROJECT LINKS
JGI Portal Download Raw Sequence Data
Project Information
  
Database
  
Genome Publications Nature biotechnology 35(7):676-683 1,003 reference genomes of bacterial and archaeal isolates expand coverage of the tree of life.

Other Publications
  
SRA Experiment
  
PROJECT COMPOSITION
Study A Genomic Encyclopedia of Bacteria and Archaea (GEBA)
Organism Thermocrinis ruber DSM 23557
Analysis Projects Thermocrinis ruber DSM 23557
Number of Analysis Projects (AP)
1  
Number of Derived Analyis Projects (DAP)
0  
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality (MIGS-31) Level 6: Finished
Finishing Goal Level 2: High-Quality Draft
Sequencing Comments
  
Sequencing Technology (MIGS-29)
  
Library Method (MIGS-28)
  
Number Of Reads
  
Read Size
  
Vector
  
GC Percent
45  
Chromosome Count
1  
Plasmid Count
0  
ORGANISM NAME
GOLD Organism ID Go0015082
Organism Name
Thermocrinis ruber DSM 23557  
Other names (alias, synonyms, short names, common names)
  
Organism Domain
BACTERIAL  
Phylogeny
AQUIFICAE  
Genus
Thermocrinis  
Genus Synonyms
  
Species
Thermocrinis ruber  
Subspecies
  
Species Synonyms
  
Strain
DSM 23557  
Strain Synonyms
  
Serovar/Cultivar
  
Culture Collection ID
DSM 23557  
Type Strain
Yes  
Exemplar DOI
10.1601/ex.445  
Exemplar Name
Thermocrinis ruber  
Taxon DOI
10.1601/tx.445  
Biosafety Level
  
Organism Comments
  
Cultured
Yes  
Culture Type
Isolate  
Organism Type
Natural  
Uncultured Type
  
Commercial Strain
  
Commercial Strain Comments
  
ORGANISM TAXONOMY
NCBI Taxonomy ID 75906
NCBI Superkingdom
Bacteria  
NCBI Kingdom
  
NCBI Phylum
Aquificae  
NCBI Class
Aquificae  
NCBI Order
Aquificales  
NCBI Family
Aquificaceae  
NCBI Genus
Thermocrinis  
NCBI Species
Thermocrinis ruber  
ISOLATION CLASSIFICATION
Ecosystem
Environmental  
Ecosystem Category
Aquatic  
Ecosystem Type
Thermal springs  
Ecosystem Subtype
Unclassified  
Specific Ecosystem
Unclassified  
ORGANISM EXTERNAL REFERENCES
Strain Info ID
Genbank 16S ID LN681406
GENERAL PROPERTIES
Oxygen Requirement
Anaerobe  
Cell Shape
Rod-shaped  
Motility
Motile  
Sporulation
  
Temperature Range
Hyperthermophile  
Salinity
  
pH
  
Cell Diameter
  
Cell Length
  
Color
Pink  
Gram Staining
Gram-  
Biotic Relationships Free living
Symbiotic Physical Interaction
  
Symbiotic Relationship
  
Symbiont Name
  
Symbiont Taxon ID
  
Cell Arrangements Singles
Filaments
Clusters
Diseases
  
Known Habitats Hot spring
Aquatic
Metabolisms
  
Phenotypes Pink-colored
Energy Sources Chemolithoautotroph
CYANOBACTERIA METADATA
Filaments
  
Filament Type
  
Differentiated Cells
  
Position Of Heterocysts
  
Cysts
  
Mode Of Reproduction
  
Trichome
  
Trichome Type
  
Carotenoids
  
Pigments
  
Phage Infectivity
  
Phage Type
  
Restriction Enzyme
  
Toxin Production
  
Toxin Type
  
Secondary Metabolites
  
Developmental Cycle
  
Branching
  
Gas Vesicles
  
Gas Vesicle Type
  
Diagnostic Inclusion Body Information
  
Extracellular Structures
  
Bloom Forming
  
Pigment Type
  
Complementary chromatic adaptation (CCA)
  
Medium Types
  

 

 

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