PROJECT NAME
GOLD Project ID
Gp0014853  
Project Name
Thiomicrospira arctica DSM 13458  
Other Names
  
Legacy ER Project ID
22730  
Legacy GOLD ID
Gi13797  
NCBI BioProject Name Thiomicrospira arctica DSM 13458
NCBI BioProject ID 182451
NCBI BioProject Accession
PRJNA182451  
NCBI Locus Tag
F612  
NCBI BioSample Accession
SAMN02440985  
PI Kathleen Scott
Added By JGI automated process on 2012-01-27
Last Modified By Auto script update processes on 2014-08-18
Project Comments
  
PROJECT TYPE
Specimen Organism
Nucleic Acid DNA
Sequencing Strategy
Whole Genome Sequencing  
PROJECT INFORMATION
Project Status
Permanent Draft  
Project Relevance
  
Sequencing Center DOE Joint Genome Institute (JGI) (USA)
Collaborating Institute
  
Funding Agency U.S. Department of Energy (DOE) (USA)
Project Description
Thiomicrospiras: Ubiquitous, rapidly-growing autotrophs from an undersampled lineage of Gammaproteobacteria  
Project Information Visibility
Public  
EXTERNAL PROJECT LINKS
JGI Portal Download Raw Sequence Data
Project Information
  
Database
  
Genome Publications
  
Other Publications
  
PROJECT COMPOSITION
Studies Thiomicrospiras: Ubiquitous, rapidly-growing autotrophs from an undersampled lineage of Gammaproteobacteria
Analysis Projects Thiomicrospira arctica DSM 13458
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality (MIGS-31) Level 3: Improved-High-Quality Draft
Finishing Goal Level 3: Improved-High-Quality Draft
Sequencing Comments
  
Sequencing Technology (MIGS-29) Illumina HiSeq 2000
Illumina HiSeq 2500
Library Method (MIGS-28)
Illumina Regular LMP, 8kb, CLRS; Illumina Regular Fragment, 270bp  
Number Of Reads
  
Read Size
  
Vector
  
GC Percent
42  
Chromosome Count
  
Plasmid Count
  
ORGANISM NAME
GOLD Organism ID Go0014853
Organism Name
Thiomicrospira arctica DSM 13458  
Other names (alias, synonyms, short names, common names)
  
Organism Domain
BACTERIAL  
Phylogeny
PROTEOBACTERIA-GAMMA  
Genus
Thiomicrospira  
Genus Synonyms
  
Species
Thiomicrospira arctica  
Subspecies
  
Species Synonyms
  
Strain
DSM 13458  
Strain Synonyms
  
Serovar-Biovar
  
Culture Collection ID
DSM 13458  
Type Strain
Yes  
Exemplar DOI
10.1601/ex.9363  
Exemplar Name
Thiomicrospira arctica  
Taxon DOI
10.1601/tx.9363  
Biosafety Level
  
Organism Comments
  
Cultured
Yes  
Culture Type
Isolate  
Organism Type
Natural  
Uncultured Type
  
Commercial Strain
  
Commercial Strain Comments
  
ORGANISM TAXONOMY
NCBI Taxonomy ID 1123514
NCBI Kingdom
  
NCBI Phylum
Proteobacteria  
NCBI Class
Gammaproteobacteria  
NCBI Order
Thiotrichales  
NCBI Family
Piscirickettsiaceae  
NCBI Genus
Thiomicrospira  
NCBI Species
Thiomicrospira arctica  
ISOLATION CLASSIFICATION
Ecosystem
Environmental  
Ecosystem Category
Aquatic  
Ecosystem Type
Marine  
Ecosystem Subtype
Oceanic  
Specific Ecosystem
Sediment  
ORGANISM EXTERNAL REFERENCES
Strain Info ID
Genbank 16S ID
Synonym List
  
GENERAL PROPERTIES
Oxygen Requirement
  
Cell Shape
  
Motility
  
Sporulation
  
Temperature Range
  
Temperature Optimum
  
Salinity
  
pH
  
Cell Diameter
  
Cell Length
  
Color
  
Gram Staining
Gram-  
Biotic Relationships
  
Symbiotic Physical Interaction
  
Symbiotic Relationship
  
Symbiont Name
  
Symbiont Taxon ID
  
Cell Arrangements
  
Diseases
  
Known Habitats Sediment
Metabolisms
  
Phenotypes
  
Energy Sources
  

 

 

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