PROJECT NAME
GOLD Project ID
Gp0014850  
Project Name
Thioalkalivibrio thiocyanodenitrificans ARhD 1  
Other Names
  
Legacy ER Project ID
22727  
Legacy GOLD ID
Gi13750  
NCBI BioProject Name Thioalkalivibrio thiocyanodenitrificans ARhD 1
NCBI BioProject ID 81091
NCBI BioProject Accession
PRJNA81091  
NCBI Locus Tag
Thithi  
NCBI BioSample Accession
SAMN02261294  
PI Gerard Muyzer
Added By JGI automated process on 2012-01-27
Last Modified By Auto script update processes on 2014-08-18
Project Comments
  
PROJECT TYPE
Specimen Organism
Nucleic Acid DNA
Sequencing Strategy
Whole Genome Sequencing  
PROJECT INFORMATION
Project Status
Permanent Draft  
Project Relevance Biotechnological
Sequencing Center DOE Joint Genome Institute (JGI) (USA)
Collaborating Institute
  
Funding Agency U.S. Department of Energy (DOE) (USA)
Project Description
Thioalkalivibrio thiocyanodenitrificans ARhD 1 Genome sequencing  
Project Information Visibility
Public  
EXTERNAL PROJECT LINKS
JGI Portal Download Raw Sequence Data
Project Information
  
Database
  
Genome Publications
  
Other Publications
  
PROJECT COMPOSITION
Studies Genome sequencing of 3 haloalkaliphilic thiocyanate-utilizing chemolithoautotrophic bacteria of the genus Thioalkalivibrio with a potential use for a sustainable removal of toxic sulfur compounds from waste streams and energy carriers
Analysis Projects Thioalkalivibrio thiocyanodenitrificans ARhD 1
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality (MIGS-31) Level 3: Improved-High-Quality Draft
Finishing Goal Level 2: High-Quality Draft
Sequencing Comments
  
Sequencing Technology (MIGS-29) Illumina HiSeq 2000
Library Method (MIGS-28)
  
Number Of Reads
  
Read Size
  
Vector
  
GC Percent
65  
Chromosome Count
  
Plasmid Count
  
ORGANISM NAME
GOLD Organism ID Go0014850
Organism Name
Thioalkalivibrio thiocyanodenitrificans ARhD 1  
Other names (alias, synonyms, short names, common names)
  
Organism Domain
BACTERIAL  
Phylogeny
PROTEOBACTERIA-GAMMA  
Genus
Thioalkalivibrio  
Genus Synonyms
  
Species
Thioalkalivibrio thiocyanodenitrificans  
Subspecies
  
Species Synonyms
  
Strain
ARhD 1  
Strain Synonyms
  
Serovar-Biovar
  
Culture Collection ID
DSM 16954  
Type Strain
Yes  
Exemplar DOI
10.1601/ex.9480  
Exemplar Name
Thioalkalivibrio thiocyanodenitrificans  
Taxon DOI
10.1601/tx.9480  
Biosafety Level
  
Organism Comments
  
Cultured
Yes  
Culture Type
Isolate  
Organism Type
Natural  
Uncultured Type
  
Commercial Strain
  
Commercial Strain Comments
  
ORGANISM TAXONOMY
NCBI Taxonomy ID 713586
NCBI Kingdom
  
NCBI Phylum
Proteobacteria  
NCBI Class
Gammaproteobacteria  
NCBI Order
Chromatiales  
NCBI Family
Ectothiorhodospiraceae  
NCBI Genus
Thioalkalivibrio  
NCBI Species
Thioalkalivibrio thiocyanodenitrificans  
ISOLATION CLASSIFICATION
Ecosystem
Environmental  
Ecosystem Category
Aquatic  
Ecosystem Type
Non-marine Saline and Alkaline  
Ecosystem Subtype
Hypersaline  
Specific Ecosystem
Sediment  
ORGANISM EXTERNAL REFERENCES
Strain Info ID
Genbank 16S ID AY360060
Synonym List
  
GENERAL PROPERTIES
Oxygen Requirement
Anaerobe  
Cell Shape
Rod-shaped  
Motility
Motile  
Sporulation
  
Temperature Range
  
Temperature Optimum
  
Salinity
  
pH
9.6 - 10  
Cell Diameter
0.5 - 0.7 um  
Cell Length
1.5 - 5.0 um  
Color
  
Gram Staining
Gram-  
Biotic Relationships
ID 3
Term Free living
Symbiotic Physical Interaction
  
Symbiotic Relationship
  
Symbiont Name
  
Symbiont Taxon ID
  
Cell Arrangements
  
Diseases
  
Known Habitats Sediment
Metabolisms
  
Phenotypes
  
Energy Sources Chemolithoautotroph

 

 

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