PROJECT INFORMATION
GOLD Project ID
Gp0014352  
Project Name
Seleniivibrio woodruffii S4  
Other Names
Selenovibrio woodruffii S4  
Legacy ER Project ID
22452  
Legacy GOLD ID
Gi14128  
NCBI BioProject Name Selenovibrio woodruffii S4 Genome sequencing
NCBI BioProject Accession PRJNA265542
NCBI Locus Tag
OF66  
NCBI BioSample Accession SAMN03159438
PI Elisabetta Bini
Added By JGI automated process on 2012-01-27
Last Modified By JGI automated process on 2021-12-06
Project Comments
  
Project Status
Permanent Draft  
Project Relevance
  
Sequencing Center DOE Joint Genome Institute (JGI) (USA)
Collaborating Institute Rutgers University (USA)
Funding Agency U.S. Department of Energy (DOE) (USA)
Project Description
  
Is JGI Project
Yes  
Project Information Visibility Public
PROJECT TYPE
Specimen Organism
Nucleic Acid DNA
Sequencing Strategy
Whole Genome Sequencing  
EXTERNAL PROJECT LINKS
JGI Data Utilization Status
Unrestricted  
JGI Award DOI 10.46936/10.25585/60007429
JGI Portal Download Raw Sequence Data
Genome Publications
  
Other Publications
  
Ignored Publications
  
Unassigned Publications
  
SRA Experiment
 
SRA Experiment Id SRX2112541  (Link to NCBI )
Experiment Title Selenovibrio woodruffii S4
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection other
Library Name ACTHN
Library Layout SINGLE
Library Instrument PAC_BIO_RS
 
SRA Experiment Id SRX2112543  (Link to NCBI )
Experiment Title Selenovibrio woodruffii S4
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection other
Library Name ACTHN
Library Layout SINGLE
Library Instrument PAC_BIO_RS
 
SRA Experiment Id SRX2112542  (Link to NCBI )
Experiment Title Selenovibrio woodruffii S4
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection other
Library Name ACTHN
Library Layout SINGLE
Library Instrument PAC_BIO_RS
PROJECT COMPOSITION
Study Whole-genome sequencing, assembly and initial annotation of four phylogenetically diverse strains of selenate respiring bacteria
Organism Seleniivibrio woodruffii S4
Analysis Projects Seleniivibrio woodruffii S4
Number of Analysis Projects (AP) 1
Number of Derived Analyis Projects (DAP)
0  
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality (MIGS-31) Level 3: Improved-High-Quality Draft
Finishing Goal Level 3: Improved-High-Quality Draft
Contamination Screening Input
  
DNA Amplification Method
  
Single Cell Lysis Protocol
  
Single Cell Lysis Approach
  
Sequencing Comments
  
DNA Amplification Kit
  
Sequencing Technology (MIGS-29) PacBio RS
PacBio RS II
Library Method (MIGS-28)
  
Library Layout
  
Library Screening Method
  
Number Of Reads
  
Read Size
  
Vector
  
GC Percent
  
Chromosome Count
  
Plasmid Count
  
ORGANISM NAME
GOLD Organism ID Go0014352
Organism Name
Seleniivibrio woodruffii S4  
Other names (alias, synonyms, short names, common names)
Selenovibrio woodruffii S4  
Organism Domain
BACTERIAL  
Phylogeny
DEFERRIBACTERES  
Genus
Seleniivibrio  
Genus Synonyms
Selenovibrio  
Species
Seleniivibrio woodruffii  
Subspecies
  
Species Synonyms
  
Strain
S4  
Strain Synonyms
  
Serovar/Cultivar
  
Culture Collection ID
  
Type Strain
Yes  
Exemplar DOI
10.1601/ex.24628  
Exemplar Name
Seleniivibrio woodruffii  
Taxon DOI
10.1601/tx.24628  
Biosafety Level
  
Organism Comments
  
Cultured
Yes  
Culture Type
Isolate  
Organism Type
Natural  
Uncultured Type
  
Commercial Strain
  
Commercial Strain Comments
  
ORGANISM TAXONOMY
NCBI Taxonomy ID 1078050
NCBI Superkingdom
Bacteria  
NCBI Kingdom
  
NCBI Phylum
Deferribacteres  
NCBI Class
Deferribacteres  
NCBI Order
Deferribacterales  
NCBI Family
Deferribacteraceae  
NCBI Genus
Seleniivibrio  
NCBI Species
Seleniivibrio woodruffii  
ISOLATION CLASSIFICATION
Ecosystem
  
Ecosystem Category
  
Ecosystem Type
  
Ecosystem Subtype
  
Specific Ecosystem
  
ORGANISM EXTERNAL REFERENCES
Strain Info ID
Genbank 16S ID
GENERAL PROPERTIES
Oxygen Requirement
  
Cell Shape
  
Motility
  
Sporulation
  
Temperature Range
  
Salinity
  
pH
  
Cell Diameter
  
Cell Length
  
Color
  
Gram Staining
  
Biotic Relationships
  
Symbiotic Physical Interaction
  
Symbiotic Relationship
  
Symbiont Name
  
Symbiont Taxon ID
  
Cell Arrangements
  
Diseases
  
Known Habitats
  
Metabolisms
  
Phenotypes
  
Energy Sources
  
CYANOBACTERIA METADATA
Filaments
  
Filament Type
  
Differentiated Cells
  
Position Of Heterocysts
  
Cysts
  
Mode Of Reproduction
  
Trichome
  
Trichome Type
  
Carotenoids
  
Pigments
  
Phage Infectivity
  
Phage Type
  
Restriction Enzyme
  
Toxin Production
  
Toxin Type
  
Secondary Metabolites
  
Developmental Cycle
  
Branching
  
Gas Vesicles
  
Gas Vesicle Type
  
Diagnostic Inclusion Body Information
  
Extracellular Structures
  
Bloom Forming
  
Pigment Type
  
Complementary chromatic adaptation (CCA)
  
Medium Types
  

 

 

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