PROJECT INFORMATION
GOLD Project ID
Gp0014203  
Project Name
Rudanella lutea DSM 19387  
Other Names
  
Legacy ER Project ID
6374  
Legacy GOLD ID
Gi12095  
NCBI BioProject Name Rudanella lutea DSM 19387
NCBI BioProject Accession PRJNA81941
NCBI Locus Tag
Rudlu  
NCBI BioSample Accession SAMN02261300
Source Sample ID
PI Jonathan Eisen
Added By Nikos Kyrpides on 2012-01-26
Last Modified By JGI automated process on 2014-08-18
Project Comments
  
Project Status
Permanent Draft  
Project Relevance Tree of Life
GEBA
Sequencing Center DOE Joint Genome Institute (JGI) (USA)
Collaborating Institute
  
Funding Agency U.S. Department of Energy (DOE) (USA)
Leibniz Institute (Germany)
Project Description
Rudanella lutea DSM 19387 Genome sequencing  
Is JGI Project
Yes  
Project Information Visibility Public
PROJECT TYPE
Specimen Organism
Nucleic Acid DNA
Sequencing Strategy
Whole Genome Sequencing  
EXTERNAL PROJECT LINKS
JGI Data Utilization Status
  
JGI Award DOI 10.46936/10.25585/60007347
JGI Portal Download Raw Sequence Data
Genome Publications Nature biotechnology: 35(7):676-683 1,003 reference genomes of bacterial and archaeal isolates expand coverage of the tree of life.
PubMed: 28604660 DOI: 10.1038/nbt.3886
Other Publications
  
Ignored Publications
  
Unassigned Publications
  
SRA Experiment
  
PROJECT COMPOSITION
Study Continuation of the Genomic Encyclopedia of Bacteria and Archaea pilot project (GEBA)
Organism Rudanella lutea DSM 19387
Analysis Projects Rudanella lutea DSM 19387
Number of Analysis Projects (AP) 1
Number of Derived Analyis Projects (DAP)
0  
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality (MIGS-31) Level 3: Improved-High-Quality Draft
Finishing Goal Level 2: High-Quality Draft
Contamination Screening Input
  
DNA Amplification Method
  
Single Cell Lysis Protocol
  
Single Cell Lysis Approach
  
Sequencing Comments
  
DNA Amplification Kit
  
Sequencing Technology (MIGS-29)
  
Library Method (MIGS-28)
  
Library Layout
  
Library Screening Method
  
Number Of Reads
  
Read Size
  
Vector
  
GC Percent
54  
Chromosome Count
  
Plasmid Count
  
ORGANISM NAME
GOLD Organism ID Go0014203
Organism Name
Rudanella lutea DSM 19387  
Other names (alias, synonyms, short names, common names)
  
Organism Domain
BACTERIAL  
Phylogeny
BACTEROIDOTA  
Genus
Rudanella  
Genus Synonyms
  
Species
Rudanella lutea  
Subspecies
  
Species Synonyms
  
Strain
DSM 19387  
Strain Synonyms
  
Serovar/Cultivar
  
Culture Collection ID
DSM 19387  
Type Strain
Yes  
Exemplar DOI
10.1601/ex.13768  
Exemplar Name
Rudanella lutea  
Taxon DOI
10.1601/tx.13768  
Biosafety Level
  
Organism Comments
  
Cultured
Yes  
Culture Type
Isolate  
Organism Type
Natural  
Uncultured Type
  
Commercial Strain
  
Commercial Strain Comments
  
ORGANISM TAXONOMY
NCBI Taxonomy ID 1089547
NCBI Superkingdom
Bacteria  
NCBI Kingdom
  
NCBI Phylum
Bacteroidota  
NCBI Class
Cytophagia  
NCBI Order
Cytophagales  
NCBI Family
Cytophagaceae  
NCBI Genus
Rudanella  
NCBI Species
Rudanella lutea  
ISOLATION CLASSIFICATION
Ecosystem
Environmental  
Ecosystem Category
Air  
Ecosystem Type
Unclassified  
Ecosystem Subtype
Unclassified  
Specific Ecosystem
Unclassified  
ORGANISM EXTERNAL REFERENCES
Strain Info ID
Genbank 16S ID EF635010
GENERAL PROPERTIES
Oxygen Requirement
  
Cell Shape
  
Motility
  
Sporulation
  
Temperature Range
Mesophile  
Salinity
  
pH
  
Cell Diameter
  
Cell Length
  
Color
  
Gram Staining
Gram-  
Biotic Relationships
  
Symbiotic Physical Interaction
  
Symbiotic Relationship
  
Symbiont Name
  
Symbiont Taxon ID
  
Cell Arrangements
  
Diseases
  
Known Habitats Air
Metabolisms
  
Phenotypes
  
Energy Sources
  

 

 

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