PROJECT INFORMATION
GOLD Project ID
Gp0014163  
Project Name
Mycobacterium tuberculosis RGTB423  
Other Names
  
Legacy ER Project ID
6763  
Legacy GOLD ID
Gi12479, Gc02165  
NCBI BioProject Name Mycobacterium tuberculosis RGTB423
NCBI BioProject ID 73719
NCBI BioProject Accession PRJNA73719
NCBI Locus Tag
MRGA423  
NCBI BioSample Accession
PI Mundayoor,S.
Added By JGI automated process on 2012-02-02
Last Modified By JGI automated process on 2014-03-26
Project Comments
  
Project Status
Complete and Published  
Project Relevance Commercial inoculant
Medical
Sequencing Center Rajiv Gandhi Centre for Biotechnology
Collaborating Institute
  
Funding Agency
  
Project Description
The project aims to study the differences between the local isolates of Mycobacterium tuberculosis with the standard strains at the genome level. Previous studies both from our lab and others have shown the predominance of ancient strains of M. tuberculosis in South India. We are interested to further study the unique region specific genes and polymorphisms  
Project Information Visibility Public
PROJECT TYPE
Specimen Organism
Nucleic Acid DNA
Sequencing Strategy
Whole Genome Sequencing  
EXTERNAL PROJECT LINKS
Project Information
  
Database
  
Genome Publications Journal of bacteriology 194(16):4430 Whole-genome sequences of two clinical isolates of Mycobacterium tuberculosis from Kerala, South India.
Other Publications
  
PROJECT COMPOSITION
Study Mycobacterium tuberculosis RGTB423
Analysis Projects Mycobacterium tuberculosis RGTB423
Number of Analysis Projects 1
Number of DAPs
0  
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality (MIGS-31) Level 6: Finished
Finishing Goal
  
Sequencing Comments
  
Sequencing Technology (MIGS-29)
  
Library Method (MIGS-28)
  
Number Of Reads
  
Read Size
  
Vector
  
GC Percent
66  
Chromosome Count
1  
Plasmid Count
0  
ORGANISM NAME
GOLD Organism ID Go0014163
Organism Name
Mycobacterium tuberculosis RGTB423  
Other names (alias, synonyms, short names, common names)
  
Organism Domain
BACTERIAL  
Phylogeny
ACTINOBACTERIA  
Genus
Mycobacterium  
Genus Synonyms
  
Species
Mycobacterium tuberculosis  
Subspecies
  
Species Synonyms
  
Strain
RGTB423  
Strain Synonyms
  
Serovar-Biovar
  
Culture Collection ID
  
Type Strain
Unknown  
Exemplar DOI
  
Exemplar Name
  
Taxon DOI
  
Biosafety Level
  
Organism Comments
  
Cultured
Yes  
Culture Type
Isolate  
Organism Type
Natural  
Uncultured Type
  
Commercial Strain
  
Commercial Strain Comments
  
ORGANISM TAXONOMY
NCBI Taxonomy ID 1091501
NCBI Superkingdom
Bacteria  
NCBI Kingdom
  
NCBI Phylum
Actinobacteria  
NCBI Class
Actinobacteria  
NCBI Order
Corynebacteriales  
NCBI Family
Mycobacteriaceae  
NCBI Genus
Mycobacterium  
NCBI Species
Mycobacterium tuberculosis  
ISOLATION CLASSIFICATION
Ecosystem
  
Ecosystem Category
  
Ecosystem Type
  
Ecosystem Subtype
  
Specific Ecosystem
  
ORGANISM EXTERNAL REFERENCES
Strain Info ID
Genbank 16S ID
Synonym List
  
GENERAL PROPERTIES
Oxygen Requirement
  
Cell Shape
  
Motility
  
Sporulation
  
Temperature Range
  
Temperature Optimum
  
Salinity
  
pH
  
Cell Diameter
  
Cell Length
  
Color
  
Gram Staining
Gram+  
Biotic Relationships
  
Symbiotic Physical Interaction
  
Symbiotic Relationship
  
Symbiont Name
  
Symbiont Taxon ID
  
Cell Arrangements
  
Diseases
  
Known Habitats
  
Metabolisms
  
Phenotypes
  
Energy Sources
  

 

 

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