PROJECT INFORMATION
GOLD Project ID
Gp0013814  
Project Name
Desulfobacter vibrioformis DSM 8776  
Other Names
  
Legacy ER Project ID
20523  
Legacy GOLD ID
Gi11375  
NCBI BioProject Name Desulfobacter vibrioformis DSM 8776
NCBI BioProject Accession PRJNA221037
NCBI Locus Tag
Q366  
NCBI BioSample Accession SAMN02691716
Source Sample ID
PI Nikos Kyrpides
Added By JGI automated process on 2012-01-11
Last Modified By JGI automated process on 2023-06-01
Project Comments
  
Project Status
Permanent Draft  
Project Relevance Tree of Life
GEBA-KMG
Sequencing Center DOE Joint Genome Institute (JGI) (USA)
Collaborating Institute Leibniz Institute (Germany)
Funding Agency U.S. Department of Energy (DOE) (USA)
Leibniz Institute (Germany)
Project Description
  
Is JGI Project
Yes  
Project Information Visibility Public
PROJECT TYPE
Specimen Organism
Nucleic Acid DNA
Sequencing Strategy
Whole Genome Sequencing  
EXTERNAL PROJECT LINKS
JGI Data Utilization Status
Unrestricted  
JGI Award DOI 10.46936/10.25585/60000886
JGI Portal Download Raw Sequence Data
Genome Publications
  
Other Publications
  
Ignored Publications
  
Unassigned Publications
  
SRA Experiment
 
SRA Experiment Id SRX1670791  (Link to NCBI )
Experiment Title Desulfobacter vibrioformis DSM 8776
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection RANDOM
Library Name OPUG
Library Layout SINGLE
Library Instrument ILLUMINA_HI_SEQ_2500
PROJECT COMPOSITION
Study Genomic Encyclopedia of Type Strains, Phase I: the one thousand microbial genomes (KMG-I) project
Organism Desulfobacter vibrioformis DSM 8776
Analysis Projects Desulfobacter vibrioformis DSM 8776
Number of Analysis Projects (AP) 1
Number of Derived Analyis Projects (DAP)
0  
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality (MIGS-31) Level 1: Standard Draft
Finishing Goal Level 1: Standard Draft
Contamination Screening Input
  
DNA Amplification Method
  
Single Cell Lysis Protocol
  
Single Cell Lysis Approach
  
Sequencing Comments
  
DNA Amplification Kit
  
Sequencing Technology (MIGS-29) Illumina HiSeq 2500
Library Method (MIGS-28)
  
Library Layout
  
Library Screening Method
  
Number Of Reads
  
Read Size
  
Vector
  
GC Percent
47  
Chromosome Count
  
Plasmid Count
  
ORGANISM NAME
GOLD Organism ID Go0013814
Organism Name
Desulfobacter vibrioformis DSM 8776  
Other names (alias, synonyms, short names, common names)
  
Organism Domain
BACTERIAL  
Phylogeny
PROTEOBACTERIA-DELTA  
Genus
Desulfobacter  
Genus Synonyms
  
Species
Desulfobacter vibrioformis  
Subspecies
  
Species Synonyms
  
Strain
DSM 8776  
Strain Synonyms
  
Serovar/Cultivar
  
Culture Collection ID
DSM 8776  
Type Strain
Yes  
Exemplar DOI
10.1601/ex.3547  
Exemplar Name
Desulfobacter vibrioformis  
Taxon DOI
10.1601/tx.3547  
Biosafety Level
  
Organism Comments
  
Cultured
Yes  
Culture Type
Isolate  
Organism Type
Natural  
Uncultured Type
  
Commercial Strain
  
Commercial Strain Comments
  
ORGANISM TAXONOMY
NCBI Taxonomy ID 1121398
NCBI Superkingdom
Bacteria  
NCBI Kingdom
  
NCBI Phylum
Thermodesulfobacteriota  
NCBI Class
Desulfobacteria  
NCBI Order
Desulfobacterales  
NCBI Family
Desulfobacteraceae  
NCBI Genus
Desulfobacter  
NCBI Species
Desulfobacter vibrioformis  
ISOLATION CLASSIFICATION
Ecosystem
Environmental  
Ecosystem Category
Aquatic  
Ecosystem Type
Marine  
Ecosystem Subtype
Oceanic  
Specific Ecosystem
Oil-contaminated  
ORGANISM EXTERNAL REFERENCES
Strain Info ID 161169
Genbank 16S ID U12254
GENERAL PROPERTIES
Oxygen Requirement
Anaerobe  
Cell Shape
Vibrio-shaped  
Motility
Motile  
Sporulation
  
Temperature Range
Mesophile  
Salinity
  
pH
6.8  
Cell Diameter
1.9-2.5  
Cell Length
4.5-8.0  
Color
  
Gram Staining
Gram-  
Biotic Relationships
  
Symbiotic Physical Interaction
  
Symbiotic Relationship
  
Symbiont Name
  
Symbiont Taxon ID
  
Cell Arrangements Singles
Pairs
Chains
Diseases
  
Known Habitats Aquatic
Oil fields
Metabolisms Sulfate reducer
Phenotypes
  
Energy Sources
  

 

 

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