Studies
|
56,334 |
|
Biosamples
|
196,988 |
|
Sequencing Projects
|
525,360 |
|
Analysis Projects
|
384,991 |
| Organisms | 484,221 |
| PROJECT INFORMATION | |||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
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GOLD Project ID
|
Gp0013814
|
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Project Name
|
Desulfobacter vibrioformis DSM 8776
|
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Other Names
|
|
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Legacy ER Project ID
|
20523
|
||||||||||||||||||
|
Legacy GOLD ID
|
Gi11375
|
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| NCBI BioProject Name | Desulfobacter vibrioformis DSM 8776 | ||||||||||||||||||
|
NCBI BioProject Accession
|
PRJNA221037 |
||||||||||||||||||
|
NCBI Locus Tag
|
Q366
|
||||||||||||||||||
|
NCBI BioSample Accession
|
SAMN02691716 |
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Source Sample ID
|
|
||||||||||||||||||
| PI | Nikos Kyrpides | ||||||||||||||||||
| Added By | JGI automated process on 2012-01-11 | ||||||||||||||||||
| Last Modified By | JGI automated process on 2023-06-01 | ||||||||||||||||||
| Project Comments |
|
||||||||||||||||||
|
Project Status
|
Permanent Draft
|
||||||||||||||||||
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Project Relevance
|
Tree of Life GEBA-KMG |
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|
Sequencing Center
|
DOE Joint Genome Institute (JGI)
(USA)
|
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Collaborating Institute
|
Leibniz Institute
(Germany)
|
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|
Funding Agency
|
U.S. Department of Energy (DOE)
(USA)
Leibniz Institute (Germany) |
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Project Description
|
|
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| Is JGI Project |
Yes
|
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|
Project Information Visibility
|
Public | ||||||||||||||||||
| PROJECT TYPE | |||||||||||||||||||
|
Specimen
|
Organism |
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Nucleic Acid
|
DNA |
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Sequencing Strategy
|
Whole Genome Sequencing
|
||||||||||||||||||
| EXTERNAL PROJECT LINKS | |||||||||||||||||||
|
JGI Data Utilization Status
|
Unrestricted
|
||||||||||||||||||
|
JGI Award DOI
|
10.46936/10.25585/60000886 |
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| JGI Portal Download | Raw Sequence Data | ||||||||||||||||||
|
Genome Publications
|
|
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Other Publications
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Ignored Publications
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Unassigned Publications
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| SRA Experiment |
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| PROJECT COMPOSITION | |||||||||||||||||||
| Study |
Genomic Encyclopedia of Type Strains, Phase I: the one thousand microbial genomes (KMG-I) project |
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| Organism |
Desulfobacter vibrioformis DSM 8776 |
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| Analysis Projects |
Desulfobacter vibrioformis DSM 8776 |
||||||||||||||||||
| Number of Analysis Projects (AP) |
1 |
||||||||||||||||||
| Number of Derived Analyis Projects (DAP) |
0
|
||||||||||||||||||
| SEQUENCING INFORMATION | |
|---|---|
|
Sequencing Status
|
Complete |
| Sequencing Quality (MIGS-31) |
Level 1: Standard Draft |
|
Finishing Goal
|
Level 1: Standard Draft |
|
Contamination Screening Input
|
|
|
DNA Amplification Method
|
|
|
Single Cell Lysis Protocol
|
|
|
Single Cell Lysis Approach
|
|
|
Sequencing Comments
|
|
|
DNA Amplification Kit
|
|
|
Sequencing Technology
(MIGS-29)
|
Illumina HiSeq 2500 |
|
Library Method
(MIGS-28)
|
|
|
Library Layout
|
|
|
Library Screening Method
|
|
|
Number Of Reads
|
|
|
Read Size
|
|
|
Vector
|
|
| GC Percent |
47
|
| Chromosome Count |
|
| Plasmid Count |
|
| ORGANISM NAME | |
|---|---|
| GOLD Organism ID |
Go0013814 |
| Organism Name |
Desulfobacter vibrioformis DSM 8776
|
| Other names (alias, synonyms, short names, common names) |
|
| Organism Domain |
BACTERIAL
|
| Phylogeny |
PROTEOBACTERIA-DELTA
|
| Genus |
Desulfobacter
|
| Genus Synonyms |
|
| Species |
Desulfobacter vibrioformis
|
| Subspecies |
|
| Species Synonyms |
|
| Strain |
DSM 8776
|
| Strain Synonyms |
|
| Serovar/Cultivar |
|
| Culture Collection ID |
DSM 8776
|
| Type Strain |
Yes
|
| Exemplar DOI |
10.1601/ex.3547
|
| Exemplar Name |
Desulfobacter vibrioformis
|
| Taxon DOI |
10.1601/tx.3547
|
| Biosafety Level |
|
| Organism Comments |
|
| Cultured |
Yes
|
| Culture Type |
Isolate
|
| Organism Type |
Natural
|
| Uncultured Type |
|
| Commercial Strain |
|
| Commercial Strain Comments |
|
|
ORGANISM TAXONOMY
|
|
| NCBI Taxonomy ID |
1121398 |
| NCBI Superkingdom |
Bacteria
|
| NCBI Kingdom |
|
| NCBI Phylum |
Thermodesulfobacteriota
|
| NCBI Class |
Desulfobacteria
|
| NCBI Order |
Desulfobacterales
|
| NCBI Family |
Desulfobacteraceae
|
| NCBI Genus |
Desulfobacter
|
| NCBI Species |
Desulfobacter vibrioformis
|
| ISOLATION CLASSIFICATION | |
| Ecosystem |
Environmental
|
| Ecosystem Category |
Aquatic
|
| Ecosystem Type |
Marine
|
| Ecosystem Subtype |
Oceanic
|
| Specific Ecosystem |
Oil-contaminated
|
| ORGANISM EXTERNAL REFERENCES | |
| Strain Info ID |
161169 |
| Genbank 16S ID |
U12254 |
| GENERAL PROPERTIES | |
|---|---|
| Oxygen Requirement |
Anaerobe
|
| Cell Shape |
Vibrio-shaped
|
| Motility |
Motile
|
| Sporulation |
|
| Temperature Range |
Mesophile
|
| Salinity |
|
| pH |
6.8
|
| Cell Diameter |
1.9-2.5
|
| Cell Length |
4.5-8.0
|
| Color |
|
| Gram Staining |
Gram-
|
| Biotic Relationships |
|
| Symbiotic Physical Interaction |
|
| Symbiotic Relationship |
|
| Symbiont Name |
|
| Symbiont Taxon ID |
|
| Cell Arrangements |
Singles Pairs Chains |
| Diseases |
|
| Known Habitats |
Aquatic Oil fields |
| Metabolisms |
Sulfate reducer |
| Phenotypes |
|
| Energy Sources |
|
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