PROJECT INFORMATION
GOLD Project ID
Gp0013782  
Project Name
Liquorilactobacillus nagelii DSM 13675  
Other Names
  
Legacy ER Project ID
20743  
Legacy GOLD ID
Gi11595  
NCBI BioProject Name Liquorilactobacillus nagelii DSM 13675
NCBI BioProject ID 235015
NCBI BioProject Accession PRJNA235015
NCBI Locus Tag
BP45  
NCBI BioSample Accession SAMN02746040
PI Nikos Kyrpides
Added By JGI automated process on 2012-01-11
Last Modified By Supratim Mukherjee on 2020-10-28
Project Comments
  
Project Status
Permanent Draft  
Project Relevance Tree of Life
GEBA-KMG
Sequencing Center DOE Joint Genome Institute (JGI) (USA)
Collaborating Institute Leibniz Institute (Germany)
Funding Agency U.S. Department of Energy (DOE) (USA)
Leibniz Institute (Germany)
Project Description
  
Is JGI Project
Yes  
Project Information Visibility Public
PROJECT TYPE
Specimen Organism
Nucleic Acid DNA
Sequencing Strategy
Whole Genome Sequencing  
EXTERNAL PROJECT LINKS
JGI Portal Download Raw Sequence Data
Project Information
  
Database
  
Genome Publications
  
Other Publications
  
SRA Experiment
 
SRA Experiment Id SRX1760646  (Link to NCBI )
Experiment Title Lactobacillus nagelii DSM 13675
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection RANDOM
Library Name TSPU
Library Layout SINGLE
Library Instrument ILLUMINA_HI_SEQ_2000
PROJECT COMPOSITION
Study Genomic Encyclopedia of Type Strains, Phase I: the one thousand microbial genomes (KMG-I) project
Organism Liquorilactobacillus nagelii DSM 13675
Analysis Projects Liquorilactobacillus nagelii DSM 13675
Number of Analysis Projects (AP) 1
Number of Derived Analyis Projects (DAP)
0  
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality (MIGS-31) Level 1: Standard Draft
Finishing Goal Level 1: Standard Draft
Contamination Screening Input
  
DNA Amplification Method
  
Sequencing Comments
  
DNA Amplification Kit
  
Sequencing Technology (MIGS-29) Illumina
Illumina HiSeq 2500
Illumina HiSeq 2000
Library Method (MIGS-28)
Illumina Regular Fragment, 300bp, Plates  
Library Layout
  
Library Screening Method
  
Number Of Reads
  
Read Size
  
Vector
  
GC Percent
  
Chromosome Count
  
Plasmid Count
  
ORGANISM NAME
GOLD Organism ID Go0013782
Organism Name
Liquorilactobacillus nagelii DSM 13675  
Other names (alias, synonyms, short names, common names)
  
Organism Domain
BACTERIAL  
Phylogeny
FIRMICUTES  
Genus
Liquorilactobacillus  
Genus Synonyms
  
Species
Liquorilactobacillus nagelii  
Subspecies
  
Species Synonyms
  
Strain
DSM 13675  
Strain Synonyms
  
Serovar/Cultivar
  
Culture Collection ID
DSM 13675, ATCC 700692  
Type Strain
Yes  
Exemplar DOI
10.1601/ex.5406  
Exemplar Name
Lactobacillus nagelii  
Taxon DOI
10.1601/tx.5406  
Biosafety Level
  
Organism Comments
  
Cultured
Yes  
Culture Type
Isolate  
Organism Type
Natural  
Uncultured Type
  
Commercial Strain
  
Commercial Strain Comments
  
ORGANISM TAXONOMY
NCBI Taxonomy ID 1122150
NCBI Superkingdom
Bacteria  
NCBI Kingdom
  
NCBI Phylum
Firmicutes  
NCBI Class
Bacilli  
NCBI Order
Lactobacillales  
NCBI Family
Lactobacillaceae  
NCBI Genus
Liquorilactobacillus  
NCBI Species
Liquorilactobacillus nagelii  
ISOLATION CLASSIFICATION
Ecosystem
Engineered  
Ecosystem Category
Food production  
Ecosystem Type
Fermented beverages  
Ecosystem Subtype
Unclassified  
Specific Ecosystem
Unclassified  
ORGANISM EXTERNAL REFERENCES
Strain Info ID 118350
Genbank 16S ID Y17500
GENERAL PROPERTIES
Oxygen Requirement
Facultative  
Cell Shape
Rod-shaped  
Motility
  
Sporulation
  
Temperature Range
Mesophile  
Salinity
  
pH
3.7  
Cell Diameter
0.5 µm  
Cell Length
1.0-1.5 µm  
Color
  
Gram Staining
Gram+  
Biotic Relationships
  
Symbiotic Physical Interaction
  
Symbiotic Relationship
  
Symbiont Name
  
Symbiont Taxon ID
  
Cell Arrangements
  
Diseases
  
Known Habitats Wine
Metabolisms
  
Phenotypes Catalase negative
Energy Sources
  

 

 

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