PROJECT NAME
GOLD Project ID
Gp0013741  
Project Name
Cryptosporangium japonicum DSM 44713  
Other Names
  
Legacy ER Project ID
20495  
Legacy GOLD ID
Gi11347  
NCBI BioProject Name Cryptosporangium japonicum DSM 44713
NCBI BioProject ID 188812
NCBI BioProject Accession
PRJNA188812  
NCBI Locus Tag
H519  
NCBI BioSample Accession
SAMN02746012  
PI Nikos Kyrpides
Added By JGI automated process on 2012-01-11 00:00:00.0
Last Modified By JGI automated process on 2014-07-17 00:00:00.0
Project Comments
  
PROJECT TYPE
Specimen Organism
Nucleic Acid DNA
Sequencing Strategy
Whole Genome Sequencing  
PROJECT INFORMATION
Project Status
incomplete  
Project Relevance GEBA-KMG
Tree of Life
Sequencing Center DOE Joint Genome Institute (JGI) (USA)
Collaborating Institute Leibniz Institute (Germany)
Funding Agency Leibniz Institute (Germany)
U.S. Department of Energy (DOE) (USA)
Project Description
Genomic Encyclopedia of Type Strains, Phase I: one thousand microbial genomes (KMG) project. The goal of the Genomic Encyclopedia of Bacteria and Archaea (GEBA) initiative is to sequence genomes to fill phylogenetic gaps, generating reference genomes for every major and minor group of bacteria and archaea. Currently sequenced genomes have provided highly uneven coverage of the type strain material present in public culture collections. The Microbial Earth Project is an initiative of the Microbial Genomics Program of the DOE Joint Genome Institute that focuses on 1000 Type strains from the DSMZ and ATCC repositories.  
Project Information Visibility
Public  
EXTERNAL PROJECT LINKS
JGI Portal Download Raw Sequence Data
Project Information
  
Database
  
Genome Publications
  
Other Publications
  
Isolation Publications
  
NCBI SRA ID
  
PROJECT COMPOSITION
Studies Genomic Encyclopedia of Type Strains, Phase I: the one thousand microbial genomes (KMG-I) project
Analysis Projects Cryptosporangium japonicum DSM 44713
SEQUENCING INFORMATION
Sequencing Status In progress
Sequencing Quality (MIGS-31) Level 1: Standard Draft
Finishing Goal Level 1: Standard Draft
Sequencing Comments
  
Sequencing Technology (MIGS-29) Illumina
Illumina HiSeq 2000
Illumina HiSeq 2500
Library Method (MIGS-28)
Illumina Regular Fragment, 270bp; Illumina Regular Fragment, 300bp  
Number Of Reads
  
Read Size
  
Vector
  
GC Percent
70  
Chromosome Count
  
Plasmid Count
  
ORGANISM NAME
GOLD Organism ID Go0013741
Organism Name
Cryptosporangium japonicum DSM 44713  
Other names (alias, synonyms, short names, common names)
  
Organism Domain
BACTERIAL  
Phylogeny
ACTINOBACTERIA  
Genus
Cryptosporangium  
Genus Synonyms
  
Species
Cryptosporangium japonicum  
Subspecies
  
Species Synonyms
  
Strain
DSM 44713  
Strain Synonyms
  
Serovar-Biovar
  
Culture Collection ID
DSM 44713  
Type Strain
Yes  
Exemplar DOI
10.1601/ex.7664  
Exemplar Name
Cryptosporangium japonicum  
Taxon DOI
10.1601/tx.7664  
Biosafety Level
  
Organism Comments
  
Cultured
Yes  
Culture Type
Isolate  
Organism Type
Natural  
Uncultured Type
  
Commercial Strain
  
Commercial Strain Comments
  
ORGANISM TAXONOMY
NCBI Taxonomy ID 1121371
NCBI Kingdom
  
NCBI Phylum
Actinobacteria  
NCBI Class
Actinobacteria  
NCBI Order
Frankiales  
NCBI Family
Cryptosporangiaceae  
NCBI Genus
Cryptosporangium  
NCBI Species
Cryptosporangium japonicum  
ISOLATION CLASSIFICATION
Ecosystem
Environmental  
Ecosystem Category
Terrestrial  
Ecosystem Type
Soil  
Ecosystem Subtype
Unclassified  
Specific Ecosystem
Unclassified  
ORGANISM EXTERNAL REFERENCES
Strain Info ID
Genbank 16S ID
Synonym List
  
GENERAL PROPERTIES
Oxygen Requirement
Aerobe  
Cell Shape
  
Motility
  
Sporulation
Sporulating  
Temperature Range
Mesophile  
Temperature Optimum
20-25 C  
Salinity
  
pH
  
Cell Diameter
  
Cell Length
  
Color
  
Gram Staining
Gram+  
Biotic Relationships
  
Symbiotic Physical Interaction
  
Symbiotic Relationship
  
Symbiont Name
  
Symbiont Taxon ID
  
Cell Arrangements
  
Diseases
  
Known Habitats Soil
Metabolisms
  
Phenotypes
  
Energy Sources
  

 

 

  You are going to add the following user to your project, biosample and study.

 

Contact Name/Email:

Do you want to continue?

 

 

  You are going to remove permissions for the following user to your project, biosample and study.

 

Contact Name/Email:

Do you want to continue?