PROJECT NAME
GOLD Project ID
Gp0013656  
Project Name
Gramella echinicola DSM 19838  
Other Names
  
Legacy ER Project ID
20689  
Legacy GOLD ID
Gi11541  
NCBI BioProject Name Gramella echinicola DSM 19838
NCBI BioProject ID 185622
NCBI BioProject Accession
PRJNA185622  
NCBI Locus Tag
G530  
NCBI BioSample Accession
SAMN02441504  
PI Nikos Kyrpides
Added By JGI automated process on 2012-01-11
Last Modified By Nikos Kyrpides on 2015-09-14
Project Comments
  
PROJECT TYPE
Specimen Organism
Nucleic Acid DNA
Sequencing Strategy
Whole Genome Sequencing  
PROJECT INFORMATION
Project Status
Permanent Draft  
Project Relevance GEBA-KMG
Tree of Life
Sequencing Center DOE Joint Genome Institute (JGI) (USA)
Collaborating Institute Leibniz Institute (Germany)
Funding Agency Leibniz Institute (Germany)
U.S. Department of Energy (DOE) (USA)
Project Description
Genomic Encyclopedia of Type Strains, Phase I: one thousand microbial genomes (KMG) project. The goal of the Genomic Encyclopedia of Bacteria and Archaea (GEBA) initiative is to sequence genomes to fill phylogenetic gaps, generating reference genomes for every major and minor group of bacteria and archaea. Currently sequenced genomes have provided highly uneven coverage of the type strain material present in public culture collections. The Microbial Earth Project is an initiative of the Microbial Genomics Program of the DOE Joint Genome Institute that focuses on 1000 Type strains from the DSMZ and ATCC repositories.  
Project Information Visibility
Public  
EXTERNAL PROJECT LINKS
JGI Portal Download Raw Sequence Data
Project Information
  
Database
  
Genome Publications
  
Other Publications
  
Isolation Publications
  
NCBI SRA ID
  
PROJECT COMPOSITION
Studies Genomic Encyclopedia of Type Strains, Phase I: the one thousand microbial genomes (KMG-I) project
Analysis Projects Gramella echinicola DSM 19838
SEQUENCING INFORMATION
Sequencing Status Draft
Sequencing Quality (MIGS-31) Level 1: Standard Draft
Finishing Goal Level 1: Standard Draft
Sequencing Comments
  
Sequencing Technology (MIGS-29) Illumina HiSeq 2500
Illumina HiSeq 2000
Library Method (MIGS-28)
Illumina Regular Fragment, 270bp  
Number Of Reads
13,321,360 Illumina  
Read Size
2x150 bp  
Vector
  
GC Percent
37  
Chromosome Count
  
Plasmid Count
  
ORGANISM NAME
GOLD Organism ID Go0013656
Organism Name
Gramella echinicola DSM 19838  
Other names (alias, synonyms, short names, common names)
  
Organism Domain
BACTERIAL  
Phylogeny
BACTEROIDETES  
Genus
Gramella  
Genus Synonyms
  
Species
Gramella echinicola  
Subspecies
  
Species Synonyms
  
Strain
DSM 19838  
Strain Synonyms
  
Serovar-Biovar
  
Culture Collection ID
DSM 19838  
Type Strain
Yes  
Exemplar DOI
10.1601/ex.8598  
Exemplar Name
Gramella echinicola  
Taxon DOI
10.1601/tx.8598  
Biosafety Level
  
Organism Comments
  
Cultured
Yes  
Culture Type
Isolate  
Organism Type
Natural  
Uncultured Type
  
Commercial Strain
  
Commercial Strain Comments
  
ORGANISM TAXONOMY
NCBI Taxonomy ID 1121931
NCBI Kingdom
  
NCBI Phylum
Bacteroidetes  
NCBI Class
Flavobacteriia  
NCBI Order
Flavobacteriales  
NCBI Family
Flavobacteriaceae  
NCBI Genus
Gramella  
NCBI Species
Gramella echinicola  
ISOLATION CLASSIFICATION
Ecosystem
Host-associated  
Ecosystem Category
Unclassified  
Ecosystem Type
Unclassified  
Ecosystem Subtype
Unclassified  
Specific Ecosystem
Unclassified  
ORGANISM EXTERNAL REFERENCES
Strain Info ID 764075
Genbank 16S ID
Synonym List
  
GENERAL PROPERTIES
Oxygen Requirement
Aerobe  
Cell Shape
Rod-shaped  
Motility
Motile  
Sporulation
Nonsporulating  
Temperature Range
Mesophile  
Temperature Optimum
23-25 C  
Salinity
Halophile  
pH
  
Cell Diameter
0.5-0.7 um  
Cell Length
2.1-2.7 um  
Color
Yellow  
Gram Staining
Gram-  
Biotic Relationships
  
Symbiotic Physical Interaction
  
Symbiotic Relationship
  
Symbiont Name
  
Symbiont Taxon ID
  
Cell Arrangements
  
Diseases
  
Known Habitats Aquatic
Host
Marine
Metabolisms
  
Phenotypes Catalase positive
Gliding
Energy Sources Chemoorganotroph
Heterotroph

 

 

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