PROJECT INFORMATION
GOLD Project ID
Gp0013641  
Project Name
Clostridium viride DSM 6836  
Other Names
  
Legacy ER Project ID
20468  
Legacy GOLD ID
Gi11320  
NCBI BioProject Name [Clostridium] viride DSM 6836
NCBI BioProject ID 220996
NCBI BioProject Accession PRJNA220996
NCBI Locus Tag
Q325  
NCBI BioSample Accession SAMN02743968
PI Nikos Kyrpides
Added By JGI automated process on 2012-01-11
Last Modified By JGI automated process on 2021-06-22
Project Comments
  
Project Status
Permanent Draft  
Project Relevance Tree of Life
GEBA-KMG
Sequencing Center DOE Joint Genome Institute (JGI) (USA)
Collaborating Institute Leibniz Institute (Germany)
Funding Agency U.S. Department of Energy (DOE) (USA)
Leibniz Institute (Germany)
Project Description
  
Is JGI Project
Yes  
Project Information Visibility Public
PROJECT TYPE
Specimen Organism
Nucleic Acid DNA
Sequencing Strategy
Whole Genome Sequencing  
EXTERNAL PROJECT LINKS
JGI Portal Download Raw Sequence Data
Project Information
  
Database
  
Genome Publications Nature biotechnology 35(7):676-683 1,003 reference genomes of bacterial and archaeal isolates expand coverage of the tree of life.

Other Publications
  
SRA Experiment
 
SRA Experiment Id SRX1670775  (Link to NCBI )
Experiment Title Clostridium viride DSM 6836
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection RANDOM
Library Name OPWN
Library Layout SINGLE
Library Instrument ILLUMINA_HI_SEQ_2500
PROJECT COMPOSITION
Study Genomic Encyclopedia of Type Strains, Phase I: the one thousand microbial genomes (KMG-I) project
Organism Clostridium viride DSM 6836
Analysis Projects Clostridium viride DSM 6836
Number of Analysis Projects (AP) 1
Number of Derived Analyis Projects (DAP)
0  
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality (MIGS-31) Level 1: Standard Draft
Finishing Goal Level 1: Standard Draft
Contamination Screening Input
  
DNA Amplification Method
  
Sequencing Comments
  
DNA Amplification Kit
  
Sequencing Technology (MIGS-29) Illumina
Illumina HiSeq 2500
Illumina HiSeq 2000
Library Method (MIGS-28)
Illumina Regular Fragment, 300bp, Plates  
Library Layout
  
Library Screening Method
  
Number Of Reads
  
Read Size
  
Vector
  
GC Percent
49  
Chromosome Count
  
Plasmid Count
  
ORGANISM NAME
GOLD Organism ID Go0013641
Organism Name
Clostridium viride DSM 6836  
Other names (alias, synonyms, short names, common names)
  
Organism Domain
BACTERIAL  
Phylogeny
FIRMICUTES  
Genus
Clostridium  
Genus Synonyms
  
Species
Clostridium viride  
Subspecies
  
Species Synonyms
  
Strain
DSM 6836  
Strain Synonyms
  
Serovar/Cultivar
  
Culture Collection ID
DSM 6836  
Type Strain
Yes  
Exemplar DOI
10.1601/ex.4052  
Exemplar Name
Clostridium viride  
Taxon DOI
10.1601/tx.4052  
Biosafety Level
1  
Organism Comments
  
Cultured
Yes  
Culture Type
Isolate  
Organism Type
Natural  
Uncultured Type
  
Commercial Strain
  
Commercial Strain Comments
  
ORGANISM TAXONOMY
NCBI Taxonomy ID 1121344
NCBI Superkingdom
Bacteria  
NCBI Kingdom
  
NCBI Phylum
Firmicutes  
NCBI Class
Clostridia  
NCBI Order
Eubacteriales  
NCBI Family
Oscillospiraceae  
NCBI Genus
  
NCBI Species
[Clostridium] viride  
ISOLATION CLASSIFICATION
Ecosystem
Engineered  
Ecosystem Category
Wastewater  
Ecosystem Type
Unclassified  
Ecosystem Subtype
Unclassified  
Specific Ecosystem
Unclassified  
ORGANISM EXTERNAL REFERENCES
Strain Info ID 113402
Genbank 16S ID X81125
GENERAL PROPERTIES
Oxygen Requirement
Anaerobe  
Cell Shape
Oval-shaped  
Motility
Motile  
Sporulation
Sporulating  
Temperature Range
Mesophile  
Salinity
  
pH
  
Cell Diameter
0.8 um  
Cell Length
1.2-1.5 um  
Color
  
Gram Staining
Gram+  
Biotic Relationships
  
Symbiotic Physical Interaction
  
Symbiotic Relationship
  
Symbiont Name
  
Symbiont Taxon ID
  
Cell Arrangements
  
Diseases
  
Known Habitats Sludge
Metabolisms
  
Phenotypes Catalase negative
Energy Sources
  

 

 

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