PROJECT NAME
GOLD Project ID
Gp0013584  
Project Name
Geopsychrobacter electrodiphilus DSM 16401  
Other Names
  
Legacy ER Project ID
20674  
Legacy GOLD ID
Gi11526  
NCBI BioProject Name Geopsychrobacter electrodiphilus DSM 16401
NCBI BioProject ID 179458
NCBI BioProject Accession
PRJNA179458  
NCBI Locus Tag
D888  
NCBI BioSample Accession
SAMN02441294  
PI Joseph Grzymski
Added By JGI automated process on 2012-01-11
Last Modified By JGI automated process on 2014-10-27
Project Comments
  
PROJECT TYPE
Specimen Organism
Nucleic Acid DNA
Sequencing Strategy
Whole Genome Sequencing  
PROJECT INFORMATION
Project Status
Permanent Draft  
Project Relevance GEBA-KMG
Tree of Life
Sequencing Center DOE Joint Genome Institute (JGI) (USA)
Collaborating Institute Leibniz Institute (Germany)
Funding Agency Leibniz Institute (Germany)
U.S. Department of Energy (DOE) (USA)
Project Description
Genomic Encyclopedia of Type Strains, Phase I: one thousand microbial genomes (KMG) project. The goal of the Genomic Encyclopedia of Bacteria and Archaea (GEBA) initiative is to sequence genomes to fill phylogenetic gaps, generating reference genomes for every major and minor group of bacteria and archaea. Currently sequenced genomes have provided highly uneven coverage of the type strain material present in public culture collections. The Microbial Earth Project is an initiative of the Microbial Genomics Program of the DOE Joint Genome Institute that focuses on 1000 Type strains from the DSMZ and ATCC repositories.  
Project Information Visibility
Public  
EXTERNAL PROJECT LINKS
JGI Portal Download Raw Sequence Data
Project Information
  
Database
  
Genome Publications
  
Other Publications
  
Isolation Publications
  
PROJECT COMPOSITION
Studies Genomic Encyclopedia of Type Strains, Phase I: the one thousand microbial genomes (KMG-I) project
Analysis Projects Geopsychrobacter electrodiphilus DSM 16401
SEQUENCING INFORMATION
Sequencing Status Draft
Sequencing Quality (MIGS-31) Level 3: Improved-High-Quality Draft
Finishing Goal Level 3: Improved-High-Quality Draft
Sequencing Comments
  
Sequencing Technology (MIGS-29) Illumina
Illumina HiSeq 2000
Illumina HiSeq 2500
Library Method (MIGS-28)
Illumina Regular LMP, 8kb, CLRS; Illumina Regular Fragment, 270bp  
Number Of Reads
  
Read Size
  
Vector
  
GC Percent
53  
Chromosome Count
  
Plasmid Count
  
ORGANISM NAME
GOLD Organism ID Go0013584
Organism Name
Geopsychrobacter electrodiphilus DSM 16401  
Other names (alias, synonyms, short names, common names)
  
Organism Domain
BACTERIAL  
Phylogeny
PROTEOBACTERIA-DELTA  
Genus
Geopsychrobacter  
Genus Synonyms
  
Species
Geopsychrobacter electrodiphilus  
Subspecies
  
Species Synonyms
  
Strain
DSM 16401  
Strain Synonyms
  
Serovar-Biovar
  
Culture Collection ID
DSM 16401  
Type Strain
Yes  
Exemplar DOI
10.1601/ex.9282  
Exemplar Name
Geopsychrobacter electrodiphilus  
Taxon DOI
10.1601/tx.9282  
Biosafety Level
  
Organism Comments
  
Cultured
Yes  
Culture Type
Isolate  
Organism Type
Natural  
Uncultured Type
  
Commercial Strain
  
Commercial Strain Comments
  
ORGANISM TAXONOMY
NCBI Taxonomy ID 1121918
NCBI Kingdom
  
NCBI Phylum
Proteobacteria  
NCBI Class
Deltaproteobacteria  
NCBI Order
Desulfuromonadales  
NCBI Family
Geobacteraceae  
NCBI Genus
Geopsychrobacter  
NCBI Species
Geopsychrobacter electrodiphilus  
ISOLATION CLASSIFICATION
Ecosystem
Engineered  
Ecosystem Category
Industrial production  
Ecosystem Type
Engineered product  
Ecosystem Subtype
Unclassified  
Specific Ecosystem
Unclassified  
ORGANISM EXTERNAL REFERENCES
Strain Info ID 386428
Genbank 16S ID
Synonym List
  
GENERAL PROPERTIES
Oxygen Requirement
Anaerobe  
Cell Shape
Curved-shaped  
Motility
Motile  
Sporulation
Nonsporulating  
Temperature Range
Psychrotrophic  
Temperature Optimum
22 C  
Salinity
  
pH
  
Cell Diameter
0.22 um  
Cell Length
2.5 um  
Color
  
Gram Staining
Gram-  
Biotic Relationships
  
Symbiotic Physical Interaction
  
Symbiotic Relationship
  
Symbiont Name
  
Symbiont Taxon ID
  
Cell Arrangements Chains
Singles
Diseases
  
Known Habitats Aquatic
Marine
Sediment
Metabolisms
  
Phenotypes
  
Energy Sources Chemoorganotroph

 

 

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