Studies
|
56,335 |
|
Biosamples
|
196,965 |
|
Sequencing Projects
|
525,335 |
|
Analysis Projects
|
385,117 |
| Organisms | 484,218 |
| PROJECT INFORMATION | |
|---|---|
|
GOLD Project ID
|
Gp0013570
|
|
Project Name
|
Fodinicurvata sediminis DSM 21159
|
|
Other Names
|
|
|
Legacy ER Project ID
|
20660
|
|
Legacy GOLD ID
|
Gi11512
|
| NCBI BioProject Name | Fodinicurvata sediminis DSM 21159 |
|
NCBI BioProject Accession
|
PRJNA185585 |
|
NCBI Locus Tag
|
G502
|
|
NCBI BioSample Accession
|
SAMN02441250 |
|
Source Sample ID
|
|
| PI | Nikos Kyrpides |
| Added By | JGI automated process on 2012-01-11 |
| Last Modified By | JGI automated process on 2022-09-05 |
| Project Comments |
|
|
Project Status
|
Permanent Draft
|
|
Project Relevance
|
Tree of Life GEBA-KMG |
|
Sequencing Center
|
DOE Joint Genome Institute (JGI)
(USA)
|
|
Collaborating Institute
|
Leibniz Institute
(Germany)
|
|
Funding Agency
|
U.S. Department of Energy (DOE)
(USA)
Leibniz Institute (Germany) |
|
Project Description
|
Genomic Encyclopedia of Type Strains, Phase I: one thousand microbial genomes (KMG) project. The goal of the Genomic Encyclopedia of Bacteria and Archaea (GEBA) initiative is to sequence genomes to fill phylogenetic gaps, generating reference genomes for every major and minor group of bacteria and archaea. Currently sequenced genomes have provided highly uneven coverage of the type strain material present in public culture collections. The Microbial Earth Project is an initiative of the Microbial Genomics Program of the DOE Joint Genome Institute that focuses on 1000 Type strains from the DSMZ and ATCC repositories.
|
| Is JGI Project |
Yes
|
|
Project Information Visibility
|
Public |
| PROJECT TYPE | |
|
Specimen
|
Organism |
|
Nucleic Acid
|
DNA |
|
Sequencing Strategy
|
Whole Genome Sequencing
|
| EXTERNAL PROJECT LINKS | |
|
JGI Data Utilization Status
|
Unrestricted
|
|
JGI Award DOI
|
10.46936/10.25585/60000886 |
| JGI Portal Download | Raw Sequence Data |
|
Genome Publications
|
Nature biotechnology: 35(7):676-683 1,003 reference genomes of bacterial and archaeal isolates expand coverage of the tree of life. PubMed: 28604660 DOI: 10.1038/nbt.3886 |
|
Other Publications
|
|
|
Ignored Publications
|
|
|
Unassigned Publications
|
|
| SRA Experiment |
|
| PROJECT COMPOSITION | |
| Study |
Genomic Encyclopedia of Type Strains, Phase I: the one thousand microbial genomes (KMG-I) project |
| Organism |
Fodinicurvata sediminis DSM 21159 |
| Analysis Projects |
Fodinicurvata sediminis DSM 21159 |
| Number of Analysis Projects (AP) |
1 |
| Number of Derived Analyis Projects (DAP) |
0
|
| SEQUENCING INFORMATION | |
|---|---|
|
Sequencing Status
|
Complete |
| Sequencing Quality (MIGS-31) |
Level 1: Standard Draft |
|
Finishing Goal
|
Level 1: Standard Draft |
|
Contamination Screening Input
|
|
|
DNA Amplification Method
|
|
|
Single Cell Lysis Protocol
|
|
|
Single Cell Lysis Approach
|
|
|
Sequencing Comments
|
|
|
DNA Amplification Kit
|
|
|
Sequencing Technology
(MIGS-29)
|
Illumina HiSeq 2500 |
|
Library Method
(MIGS-28)
|
|
|
Library Layout
|
|
|
Library Screening Method
|
|
|
Number Of Reads
|
|
|
Read Size
|
|
|
Vector
|
|
| GC Percent |
61
|
| Chromosome Count |
|
| Plasmid Count |
|
| ORGANISM NAME | |
|---|---|
| GOLD Organism ID |
Go0013570 |
| Organism Name |
Fodinicurvata sediminis DSM 21159
|
| Other names (alias, synonyms, short names, common names) |
|
| Organism Domain |
BACTERIAL
|
| Phylogeny |
PSEUDOMONADOTA
|
| Genus |
Fodinicurvata
|
| Genus Synonyms |
|
| Species |
Fodinicurvata sediminis
|
| Subspecies |
|
| Species Synonyms |
|
| Strain |
DSM 21159
|
| Strain Synonyms |
|
| Serovar/Cultivar |
|
| Culture Collection ID |
DSM 21159
|
| Type Strain |
Yes
|
| Exemplar DOI |
10.1601/ex.14767
|
| Exemplar Name |
Fodinicurvata sediminis
|
| Taxon DOI |
10.1601/tx.14767
|
| Biosafety Level |
|
| Organism Comments |
|
| Cultured |
Yes
|
| Culture Type |
Isolate
|
| Organism Type |
Natural
|
| Uncultured Type |
|
| Commercial Strain |
|
| Commercial Strain Comments |
|
|
ORGANISM TAXONOMY
|
|
| NCBI Taxonomy ID |
570952 |
| NCBI Superkingdom |
Bacteria
|
| NCBI Kingdom |
|
| NCBI Phylum |
Pseudomonadota
|
| NCBI Class |
Alphaproteobacteria
|
| NCBI Order |
Hyphomicrobiales
|
| NCBI Family |
Rhodovibrionaceae
|
| NCBI Genus |
Fodinicurvata
|
| NCBI Species |
Fodinicurvata sediminis
|
| ISOLATION CLASSIFICATION | |
| Ecosystem |
Environmental
|
| Ecosystem Category |
Terrestrial
|
| Ecosystem Type |
Geologic
|
| Ecosystem Subtype |
Mine
|
| Specific Ecosystem |
Unclassified
|
| ORGANISM EXTERNAL REFERENCES | |
| Strain Info ID |
844541 |
| Genbank 16S ID |
FJ357426 |
| GENERAL PROPERTIES | |
|---|---|
| Oxygen Requirement |
Facultative
|
| Cell Shape |
Rod-shaped
|
| Motility |
Nonmotile
|
| Sporulation |
|
| Temperature Range |
Mesophile
|
| Salinity |
|
| pH |
6.5
|
| Cell Diameter |
0.3-0.5 um
|
| Cell Length |
0.7-1.5 um
|
| Color |
|
| Gram Staining |
Gram-
|
| Biotic Relationships |
|
| Symbiotic Physical Interaction |
|
| Symbiotic Relationship |
|
| Symbiont Name |
|
| Symbiont Taxon ID |
|
| Cell Arrangements |
|
| Diseases |
|
| Known Habitats |
Sediment Salt mine |
| Metabolisms |
Nitrate reducer |
| Phenotypes |
Catalase positive |
| Energy Sources |
Chemoheterotroph |
You are going to add the following user to your project, biosample and study.
Contact Name/Email: Do you want to continue?
You are going to remove permissions for the following user to your project, biosample and study.
Contact Name/Email: Do you want to continue?
Changing the SP visibility will also change visibility on the following items:
Do you want to continue with this visibility change?
Checking that this Sequencing Project can be made private:
Do you want to continue with this visibility change?
Changing the SP Sequencing Strategy will also effect these items:
Do you want to continue with this Sequencing Strategy change?
