PROJECT NAME
GOLD Project ID
Gp0013450  
Project Name
Atopobium fossor DSM 15642  
Other Names
  
Legacy ER Project ID
20316  
Legacy GOLD ID
Gi11168  
NCBI BioProject Name Atopobium fossor DSM 15642
NCBI BioProject ID 185552
NCBI BioProject Accession
PRJNA185552  
NCBI Locus Tag
G469  
NCBI BioSample Accession
SAMN02440747  
PI Nikos Kyrpides
Added By JGI automated process on 2012-01-11
Last Modified By Auto script update processes on 2014-08-18
Project Comments
  
PROJECT TYPE
Specimen Organism
Nucleic Acid DNA
Sequencing Strategy
Whole Genome Sequencing  
PROJECT INFORMATION
Project Status
Permanent Draft  
Project Relevance GEBA-KMG
Tree of Life
Sequencing Center DOE Joint Genome Institute (JGI) (USA)
Collaborating Institute Leibniz Institute (Germany)
Funding Agency Leibniz Institute (Germany)
U.S. Department of Energy (DOE) (USA)
Project Description
Genomic Encyclopedia of Type Strains, Phase I: one thousand microbial genomes (KMG) project. The goal of the Genomic Encyclopedia of Bacteria and Archaea (GEBA) initiative is to sequence genomes to fill phylogenetic gaps, generating reference genomes for every major and minor group of bacteria and archaea. Currently sequenced genomes have provided highly uneven coverage of the type strain material present in public culture collections. The Microbial Earth Project is an initiative of the Microbial Genomics Program of the DOE Joint Genome Institute that focuses on 1000 Type strains from the DSMZ and ATCC repositories.  
Project Information Visibility
Public  
EXTERNAL PROJECT LINKS
JGI Portal Download Raw Sequence Data
Project Information Isolation
Database
  
Genome Publications
  
Other Publications
  
Isolation Publications
  
PROJECT COMPOSITION
Studies Genomic Encyclopedia of Type Strains, Phase I: the one thousand microbial genomes (KMG-I) project
Analysis Projects Atopobium fossor DSM 15642
SEQUENCING INFORMATION
Sequencing Status Draft
Sequencing Quality (MIGS-31) Level 1: Standard Draft
Finishing Goal Level 1: Standard Draft
Sequencing Comments
  
Sequencing Technology (MIGS-29) Illumina
Illumina HiSeq 2000
Illumina HiSeq 2500
Library Method (MIGS-28)
Illumina Regular Fragment, 270bp  
Number Of Reads
  
Read Size
  
Vector
  
GC Percent
45  
Chromosome Count
  
Plasmid Count
  
ORGANISM NAME
GOLD Organism ID Go0013450
Organism Name
Atopobium fossor DSM 15642  
Other names (alias, synonyms, short names, common names)
  
Organism Domain
BACTERIAL  
Phylogeny
ACTINOBACTERIA  
Genus
Atopobium  
Genus Synonyms
  
Species
Atopobium fossor  
Subspecies
  
Species Synonyms
  
Strain
DSM 15642  
Strain Synonyms
  
Serovar-Biovar
  
Culture Collection ID
DSM 15642  
Type Strain
Yes  
Exemplar DOI
10.1601/ex.4251  
Exemplar Name
Atopobium fossor  
Taxon DOI
10.1601/tx.5741  
Biosafety Level
2  
Organism Comments
  
Cultured
Yes  
Culture Type
Isolate  
Organism Type
Natural  
Uncultured Type
  
Commercial Strain
  
Commercial Strain Comments
  
ORGANISM TAXONOMY
NCBI Taxonomy ID 1121023
NCBI Kingdom
  
NCBI Phylum
Actinobacteria  
NCBI Class
Coriobacteriia  
NCBI Order
Coriobacteriales  
NCBI Family
Atopobiaceae  
NCBI Genus
Atopobium  
NCBI Species
Atopobium fossor  
ISOLATION CLASSIFICATION
Ecosystem
Host-associated  
Ecosystem Category
Animal  
Ecosystem Type
Respiratory system  
Ecosystem Subtype
Unclassified  
Specific Ecosystem
Unclassified  
ORGANISM EXTERNAL REFERENCES
Strain Info ID
Genbank 16S ID
Synonym List
  
GENERAL PROPERTIES
Oxygen Requirement
Obligate anaerobe  
Cell Shape
Rod-shaped  
Motility
Nonmotile  
Sporulation
  
Temperature Range
Mesophile  
Temperature Optimum
  
Salinity
  
pH
  
Cell Diameter
0.3 um  
Cell Length
0.5-0.9 um  
Color
  
Gram Staining
Gram+  
Biotic Relationships
  
Symbiotic Physical Interaction
  
Symbiotic Relationship
  
Symbiont Name
  
Symbiont Taxon ID
  
Cell Arrangements
  
Diseases
  
Known Habitats Host
Metabolisms
  
Phenotypes Non-Haemolytic
Energy Sources
  
CYANOBACTERIA METADATA
Filaments
  
Filament Type
  
Differentiated Cells
  
Position Of Heterocysts
  
Cysts
  
Mode Of Reproduction
  
Trichome
  
Trichome Type
  
Carotenoids
  
Pigments
  
Phage Infectivity
  
Phage Type
  
Restriction Enzyme
  
Toxin Production
  
Toxin Type
  
Secondary Metabolites
  
Developmental Cycle
  
Branching
  
Gas Vesicles
  
Gas Vesicle Type
  
Diagnostic Inclusion Body Information
  
Extracellular Structures
  
Bloom Forming
  
Pigment Type
  
Complementary chromatic adaptation (CCA)
  
Medium Types
  

 

 

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