PROJECT INFORMATION | |||||||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
GOLD Project ID
![]() |
Gp0013437
|
||||||||||||||||||
Project Name
![]() |
Ferrimicrobium acidiphilum DSM 19497
|
||||||||||||||||||
Other Names
![]() |
|
||||||||||||||||||
Legacy ER Project ID
![]() |
20630
|
||||||||||||||||||
Legacy GOLD ID
![]() |
Gi11482
|
||||||||||||||||||
NCBI BioProject Name | Ferrimicrobium acidiphilum DSM 19497 | ||||||||||||||||||
NCBI BioProject ID
![]() |
221038 |
||||||||||||||||||
NCBI BioProject Accession
![]() |
PRJNA221038 |
||||||||||||||||||
NCBI Locus Tag
![]() |
Q367
|
||||||||||||||||||
NCBI BioSample Accession
![]() |
SAMN02745886 |
||||||||||||||||||
PI | Nikos Kyrpides | ||||||||||||||||||
Added By |
JGI automated process
on 2012-01-11 |
||||||||||||||||||
Last Modified By |
JGI automated process
on 2020-06-11 |
||||||||||||||||||
Project Comments |
|
||||||||||||||||||
Project Status
![]() |
Permanent Draft
|
||||||||||||||||||
Project Relevance
![]() |
Tree of Life GEBA-KMG |
||||||||||||||||||
Sequencing Center
![]() |
DOE Joint Genome Institute (JGI)
(USA)
|
||||||||||||||||||
Collaborating Institute
![]() |
Leibniz Institute
(Germany)
|
||||||||||||||||||
Funding Agency
![]() |
U.S. Department of Energy (DOE)
(USA)
Leibniz Institute (Germany) |
||||||||||||||||||
Project Description
![]() |
|
||||||||||||||||||
Is JGI Project |
Yes
|
||||||||||||||||||
Project Information Visibility
![]() |
Public | ||||||||||||||||||
PROJECT TYPE | |||||||||||||||||||
Specimen
![]() |
Organism |
||||||||||||||||||
Nucleic Acid
![]() |
DNA |
||||||||||||||||||
Sequencing Strategy
![]() |
Whole Genome Sequencing
|
||||||||||||||||||
EXTERNAL PROJECT LINKS | |||||||||||||||||||
JGI Portal Download | Raw Sequence Data | ||||||||||||||||||
Project Information
![]() |
|
||||||||||||||||||
Database
![]() |
|
||||||||||||||||||
Genome Publications
![]() |
|
||||||||||||||||||
Other Publications
![]() |
|
||||||||||||||||||
SRA Experiment |
|
||||||||||||||||||
PROJECT COMPOSITION | |||||||||||||||||||
Study |
Genomic Encyclopedia of Type Strains, Phase I: the one thousand microbial genomes (KMG-I) project |
||||||||||||||||||
Organism |
Ferrimicrobium acidiphilum DSM 19497 |
||||||||||||||||||
Analysis Projects |
Ferrimicrobium acidiphilum DSM 19497 |
||||||||||||||||||
Number of Analysis Projects (AP) |
1
|
||||||||||||||||||
Number of Derived Analyis Projects (DAP) |
0
|
SEQUENCING INFORMATION | |
---|---|
Sequencing Status
![]() |
Complete |
Sequencing Quality (MIGS-31) |
Level 1: Standard Draft |
Finishing Goal
![]() |
Level 1: Standard Draft |
Contamination Screening Input
![]() |
|
DNA Amplification Method
![]() |
|
Sequencing Comments
![]() |
|
DNA Amplification Kit
![]() |
|
Sequencing Technology
(MIGS-29)
![]() |
Illumina Illumina HiSeq 2500 Illumina HiSeq 2000 |
Library Method
(MIGS-28)
![]() |
Illumina Regular Fragment, 300bp, Plates
|
Library Layout
![]() |
|
Library Screening Method
![]() |
|
Number Of Reads
![]() |
|
Read Size
![]() |
|
Vector
![]() |
|
GC Percent |
|
Chromosome Count |
|
Plasmid Count |
|
ORGANISM NAME | |
---|---|
GOLD Organism ID |
Go0013437 |
Organism Name |
Ferrimicrobium acidiphilum DSM 19497
|
Other names (alias, synonyms, short names, common names) |
|
Organism Domain |
BACTERIAL
|
Phylogeny |
ACTINOBACTERIA
|
Genus |
Ferrimicrobium
|
Genus Synonyms |
|
Species |
Ferrimicrobium acidiphilum
|
Subspecies |
|
Species Synonyms |
|
Strain |
T23
|
Strain Synonyms |
|
Serovar/Cultivar |
|
Culture Collection ID |
DSM 19497
|
Type Strain |
Yes
|
Exemplar DOI |
10.1601/ex.14256
|
Exemplar Name |
Ferrimicrobium acidiphilum
|
Taxon DOI |
10.1601/tx.14256
|
Biosafety Level |
|
Organism Comments |
|
Cultured |
Yes
|
Culture Type |
Isolate
|
Organism Type |
Natural
|
Uncultured Type |
|
Commercial Strain |
|
Commercial Strain Comments |
|
ORGANISM TAXONOMY
![]() |
|
NCBI Taxonomy ID |
1121877 |
NCBI Superkingdom |
Bacteria
|
NCBI Kingdom |
|
NCBI Phylum |
Actinobacteria
|
NCBI Class |
Acidimicrobiia
|
NCBI Order |
Acidimicrobiales
|
NCBI Family |
Acidimicrobiaceae
|
NCBI Genus |
Ferrimicrobium
|
NCBI Species |
Ferrimicrobium acidiphilum
|
ISOLATION CLASSIFICATION | |
Ecosystem |
Environmental
|
Ecosystem Category |
Terrestrial
|
Ecosystem Type |
Geologic
|
Ecosystem Subtype |
Mine
|
Specific Ecosystem |
Unclassified
|
ORGANISM EXTERNAL REFERENCES | |
Strain Info ID |
377934 |
Genbank 16S ID |
AF251436 |
GENERAL PROPERTIES | |
---|---|
Oxygen Requirement |
Facultative
|
Cell Shape |
Rod-shaped
|
Motility |
Motile
|
Sporulation |
Nonsporulating
|
Temperature Range |
Mesophile
|
Salinity |
|
pH |
2
|
Cell Diameter |
0.5 um
|
Cell Length |
1.0-3.0 um
|
Color |
|
Gram Staining |
Gram+
|
Biotic Relationships |
|
Symbiotic Physical Interaction |
|
Symbiotic Relationship |
|
Symbiont Name |
|
Symbiont Taxon ID |
|
Cell Arrangements |
|
Diseases |
|
Known Habitats |
Mine Aquatic Acid mine drainage Mine water |
Metabolisms |
|
Phenotypes |
Acidophile |
Energy Sources |
Heterotroph |
CYANOBACTERIA METADATA | |
Filaments |
|
Filament Type |
|
Differentiated Cells |
|
Position Of Heterocysts |
|
Cysts |
|
Mode Of Reproduction |
|
Trichome |
|
Trichome Type |
|
Carotenoids |
|
Pigments |
|
Phage Infectivity |
|
Phage Type |
|
Restriction Enzyme |
|
Toxin Production |
|
Toxin Type |
|
Secondary Metabolites |
|
Developmental Cycle |
|
Branching |
|
Gas Vesicles |
|
Gas Vesicle Type |
|
Diagnostic Inclusion Body Information |
|
Extracellular Structures |
|
Bloom Forming |
|
Pigment Type |
|
Complementary chromatic adaptation (CCA) |
|
Medium Types |
|
You are going to add the following user to your project, biosample and study.
Contact Name/Email: Do you want to continue?
You are going to remove permissions for the following user to your project, biosample and study.
Contact Name/Email: Do you want to continue?
Changing the SP visibility will also change visibility on the following items:
Do you want to continue with this visibility change?
Checking that this Sequencing Project can be made private:
Do you want to continue with this visibility change?
Changing the SP Sequencing Strategy will also effect these items:
Do you want to continue with this Sequencing Strategy change?