Studies
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47,488 |
|
Biosamples
|
121,419 |
|
Sequencing Projects
|
388,853 |
|
Analysis Projects
|
310,141 |
| Organisms | 403,380 |
| PROJECT INFORMATION | |||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
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GOLD Project ID
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Gp0013437
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Project Name
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Ferrimicrobium acidiphilum DSM 19497
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Other Names
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Legacy ER Project ID
|
20630
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Legacy GOLD ID
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Gi11482
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| NCBI BioProject Name | Ferrimicrobium acidiphilum DSM 19497 | ||||||||||||||||||
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NCBI BioProject ID
|
221038 |
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NCBI BioProject Accession
|
PRJNA221038 |
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NCBI Locus Tag
|
Q367
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NCBI BioSample Accession
|
SAMN02745886 |
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| PI | Nikos Kyrpides | ||||||||||||||||||
| Added By |
JGI automated process
on 2012-01-11 |
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| Last Modified By |
JGI automated process
on 2020-06-11 |
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| Project Comments |
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Project Status
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Permanent Draft
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Project Relevance
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Tree of Life GEBA-KMG |
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Sequencing Center
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DOE Joint Genome Institute (JGI)
(USA)
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Collaborating Institute
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Leibniz Institute
(Germany)
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Funding Agency
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U.S. Department of Energy (DOE)
(USA)
Leibniz Institute (Germany) |
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Project Description
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| Is JGI Project |
Yes
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Project Information Visibility
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Public | ||||||||||||||||||
| PROJECT TYPE | |||||||||||||||||||
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Specimen
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Organism |
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Nucleic Acid
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DNA |
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Sequencing Strategy
|
Whole Genome Sequencing
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| EXTERNAL PROJECT LINKS | |||||||||||||||||||
| JGI Portal Download | Raw Sequence Data | ||||||||||||||||||
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Project Information
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Database
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Genome Publications
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Other Publications
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| SRA Experiment |
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| PROJECT COMPOSITION | |||||||||||||||||||
| Study |
Genomic Encyclopedia of Type Strains, Phase I: the one thousand microbial genomes (KMG-I) project |
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| Organism |
Ferrimicrobium acidiphilum DSM 19497 |
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| Analysis Projects |
Ferrimicrobium acidiphilum DSM 19497 |
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| Number of Analysis Projects (AP) |
1
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| Number of Derived Analyis Projects (DAP) |
0
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| SEQUENCING INFORMATION | |
|---|---|
|
Sequencing Status
|
Complete |
| Sequencing Quality (MIGS-31) |
Level 1: Standard Draft |
|
Finishing Goal
|
Level 1: Standard Draft |
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Contamination Screening Input
|
|
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DNA Amplification Method
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Sequencing Comments
|
|
|
DNA Amplification Kit
|
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Sequencing Technology
(MIGS-29)
|
Illumina Illumina HiSeq 2500 Illumina HiSeq 2000 |
|
Library Method
(MIGS-28)
|
Illumina Regular Fragment, 300bp, Plates
|
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Library Layout
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Library Screening Method
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Number Of Reads
|
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Read Size
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Vector
|
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| GC Percent |
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| Chromosome Count |
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| Plasmid Count |
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| ORGANISM NAME | |
|---|---|
| GOLD Organism ID |
Go0013437 |
| Organism Name |
Ferrimicrobium acidiphilum DSM 19497
|
| Other names (alias, synonyms, short names, common names) |
|
| Organism Domain |
BACTERIAL
|
| Phylogeny |
ACTINOBACTERIA
|
| Genus |
Ferrimicrobium
|
| Genus Synonyms |
|
| Species |
Ferrimicrobium acidiphilum
|
| Subspecies |
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| Species Synonyms |
|
| Strain |
T23
|
| Strain Synonyms |
|
| Serovar/Cultivar |
|
| Culture Collection ID |
DSM 19497
|
| Type Strain |
Yes
|
| Exemplar DOI |
10.1601/ex.14256
|
| Exemplar Name |
Ferrimicrobium acidiphilum
|
| Taxon DOI |
10.1601/tx.14256
|
| Biosafety Level |
|
| Organism Comments |
|
| Cultured |
Yes
|
| Culture Type |
Isolate
|
| Organism Type |
Natural
|
| Uncultured Type |
|
| Commercial Strain |
|
| Commercial Strain Comments |
|
|
ORGANISM TAXONOMY
|
|
| NCBI Taxonomy ID |
1121877 |
| NCBI Superkingdom |
Bacteria
|
| NCBI Kingdom |
|
| NCBI Phylum |
Actinobacteria
|
| NCBI Class |
Acidimicrobiia
|
| NCBI Order |
Acidimicrobiales
|
| NCBI Family |
Acidimicrobiaceae
|
| NCBI Genus |
Ferrimicrobium
|
| NCBI Species |
Ferrimicrobium acidiphilum
|
| ISOLATION CLASSIFICATION | |
| Ecosystem |
Environmental
|
| Ecosystem Category |
Terrestrial
|
| Ecosystem Type |
Geologic
|
| Ecosystem Subtype |
Mine
|
| Specific Ecosystem |
Unclassified
|
| ORGANISM EXTERNAL REFERENCES | |
| Strain Info ID |
377934 |
| Genbank 16S ID |
AF251436 |
| GENERAL PROPERTIES | |
|---|---|
| Oxygen Requirement |
Facultative
|
| Cell Shape |
Rod-shaped
|
| Motility |
Motile
|
| Sporulation |
Nonsporulating
|
| Temperature Range |
Mesophile
|
| Salinity |
|
| pH |
2
|
| Cell Diameter |
0.5 um
|
| Cell Length |
1.0-3.0 um
|
| Color |
|
| Gram Staining |
Gram+
|
| Biotic Relationships |
|
| Symbiotic Physical Interaction |
|
| Symbiotic Relationship |
|
| Symbiont Name |
|
| Symbiont Taxon ID |
|
| Cell Arrangements |
|
| Diseases |
|
| Known Habitats |
Mine Aquatic Acid mine drainage Mine water |
| Metabolisms |
|
| Phenotypes |
Acidophile |
| Energy Sources |
Heterotroph |
| CYANOBACTERIA METADATA | |
| Filaments |
|
| Filament Type |
|
| Differentiated Cells |
|
| Position Of Heterocysts |
|
| Cysts |
|
| Mode Of Reproduction |
|
| Trichome |
|
| Trichome Type |
|
| Carotenoids |
|
| Pigments |
|
| Phage Infectivity |
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| Phage Type |
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| Restriction Enzyme |
|
| Toxin Production |
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| Toxin Type |
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| Secondary Metabolites |
|
| Developmental Cycle |
|
| Branching |
|
| Gas Vesicles |
|
| Gas Vesicle Type |
|
| Diagnostic Inclusion Body Information |
|
| Extracellular Structures |
|
| Bloom Forming |
|
| Pigment Type |
|
| Complementary chromatic adaptation (CCA) |
|
| Medium Types |
|
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