Studies
|
41,808 |
|
Biosamples
|
100,557 |
|
Sequencing Projects
|
342,341 |
|
Analysis Projects
|
271,016 |
| Organisms | 375,295 |
| PROJECT INFORMATION | |||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
GOLD Project ID
|
Gp0013437
|
||||||||||||||||||
|
Project Name
|
Ferrimicrobium acidiphilum DSM 19497
|
||||||||||||||||||
|
Other Names
|
|
||||||||||||||||||
|
Legacy ER Project ID
|
20630
|
||||||||||||||||||
|
Legacy GOLD ID
|
Gi11482
|
||||||||||||||||||
| NCBI BioProject Name | Ferrimicrobium acidiphilum DSM 19497 | ||||||||||||||||||
|
NCBI BioProject ID
|
221038 |
||||||||||||||||||
|
NCBI BioProject Accession
|
PRJNA221038 |
||||||||||||||||||
|
NCBI Locus Tag
|
Q367
|
||||||||||||||||||
|
NCBI BioSample Accession
|
SAMN02745886 |
||||||||||||||||||
| PI | Nikos Kyrpides | ||||||||||||||||||
| Added By |
JGI automated process
on 2012-01-11 |
||||||||||||||||||
| Last Modified By |
JGI automated process
on 2019-09-30 |
||||||||||||||||||
| Project Comments |
|
||||||||||||||||||
|
Project Status
|
Permanent Draft
|
||||||||||||||||||
|
Project Relevance
|
Tree of Life GEBA-KMG |
||||||||||||||||||
|
Sequencing Center
|
DOE Joint Genome Institute (JGI)
(USA)
|
||||||||||||||||||
|
Collaborating Institute
|
Leibniz Institute
(Germany)
|
||||||||||||||||||
|
Funding Agency
|
U.S. Department of Energy (DOE)
(USA)
Leibniz Institute (Germany) |
||||||||||||||||||
|
Project Description
|
|
||||||||||||||||||
| Is JGI Project |
Yes
|
||||||||||||||||||
|
Project Information Visibility
|
Public | ||||||||||||||||||
| PROJECT TYPE | |||||||||||||||||||
|
Specimen
|
Organism |
||||||||||||||||||
|
Nucleic Acid
|
DNA |
||||||||||||||||||
|
Sequencing Strategy
|
Whole Genome Sequencing
|
||||||||||||||||||
| EXTERNAL PROJECT LINKS | |||||||||||||||||||
| JGI Portal Download | Raw Sequence Data | ||||||||||||||||||
|
Project Information
|
|
||||||||||||||||||
|
Database
|
|
||||||||||||||||||
|
Genome Publications
|
|
||||||||||||||||||
|
Other Publications
|
|
||||||||||||||||||
| SRA Experiment |
|
||||||||||||||||||
| PROJECT COMPOSITION | |||||||||||||||||||
| Study |
Genomic Encyclopedia of Type Strains, Phase I: the one thousand microbial genomes (KMG-I) project |
||||||||||||||||||
| Organism |
Ferrimicrobium acidiphilum DSM 19497 |
||||||||||||||||||
| Analysis Projects |
Ferrimicrobium acidiphilum DSM 19497 |
||||||||||||||||||
| Number of Analysis Projects (AP) |
1
|
||||||||||||||||||
| Number of Derived Analyis Projects (DAP) |
0
|
||||||||||||||||||
| SEQUENCING INFORMATION | |
|---|---|
|
Sequencing Status
|
Complete |
| Sequencing Quality (MIGS-31) |
Level 1: Standard Draft |
|
Finishing Goal
|
Level 1: Standard Draft |
|
Sequencing Comments
|
|
|
Sequencing Technology
(MIGS-29)
|
Illumina Illumina HiSeq 2500 Illumina HiSeq 2000 |
|
Library Method
(MIGS-28)
|
Illumina Regular Fragment, 300bp, Plates
|
|
Number Of Reads
|
|
|
Read Size
|
|
|
Vector
|
|
| GC Percent |
|
| Chromosome Count |
|
| Plasmid Count |
|
| ORGANISM NAME | |
|---|---|
| GOLD Organism ID |
Go0013437 |
| Organism Name |
Ferrimicrobium acidiphilum DSM 19497
|
| Other names (alias, synonyms, short names, common names) |
|
| Organism Domain |
BACTERIAL
|
| Phylogeny |
ACTINOBACTERIA
|
| Genus |
Ferrimicrobium
|
| Genus Synonyms |
|
| Species |
Ferrimicrobium acidiphilum
|
| Subspecies |
|
| Species Synonyms |
|
| Strain |
T23
|
| Strain Synonyms |
|
| Serovar/Cultivar |
|
| Culture Collection ID |
DSM 19497
|
| Type Strain |
Yes
|
| Exemplar DOI |
10.1601/ex.14256
|
| Exemplar Name |
Ferrimicrobium acidiphilum
|
| Taxon DOI |
10.1601/tx.14256
|
| Biosafety Level |
|
| Organism Comments |
|
| Cultured |
Yes
|
| Culture Type |
Isolate
|
| Organism Type |
Natural
|
| Uncultured Type |
|
| Commercial Strain |
|
| Commercial Strain Comments |
|
|
ORGANISM TAXONOMY
|
|
| NCBI Taxonomy ID |
1121877 |
| NCBI Superkingdom |
Bacteria
|
| NCBI Kingdom |
|
| NCBI Phylum |
Actinobacteria
|
| NCBI Class |
Acidimicrobiia
|
| NCBI Order |
Acidimicrobiales
|
| NCBI Family |
Acidimicrobiaceae
|
| NCBI Genus |
Ferrimicrobium
|
| NCBI Species |
Ferrimicrobium acidiphilum
|
| ISOLATION CLASSIFICATION | |
| Ecosystem |
Environmental
|
| Ecosystem Category |
Terrestrial
|
| Ecosystem Type |
Geologic
|
| Ecosystem Subtype |
Mine
|
| Specific Ecosystem |
Unclassified
|
| ORGANISM EXTERNAL REFERENCES | |
| Strain Info ID |
377934 |
| Genbank 16S ID |
AF251436 |
| GENERAL PROPERTIES | |
|---|---|
| Oxygen Requirement |
Facultative
|
| Cell Shape |
Rod-shaped
|
| Motility |
Motile
|
| Sporulation |
Nonsporulating
|
| Temperature Range |
Mesophile
|
| Salinity |
|
| pH |
2
|
| Cell Diameter |
0.5 um
|
| Cell Length |
1.0-3.0 um
|
| Color |
|
| Gram Staining |
Gram+
|
| Biotic Relationships |
|
| Symbiotic Physical Interaction |
|
| Symbiotic Relationship |
|
| Symbiont Name |
|
| Symbiont Taxon ID |
|
| Cell Arrangements |
|
| Diseases |
|
| Known Habitats |
Mine Aquatic Acid mine drainage Mine water |
| Metabolisms |
|
| Phenotypes |
Acidophile |
| Energy Sources |
Heterotroph |
| CYANOBACTERIA METADATA | |
| Filaments |
|
| Filament Type |
|
| Differentiated Cells |
|
| Position Of Heterocysts |
|
| Cysts |
|
| Mode Of Reproduction |
|
| Trichome |
|
| Trichome Type |
|
| Carotenoids |
|
| Pigments |
|
| Phage Infectivity |
|
| Phage Type |
|
| Restriction Enzyme |
|
| Toxin Production |
|
| Toxin Type |
|
| Secondary Metabolites |
|
| Developmental Cycle |
|
| Branching |
|
| Gas Vesicles |
|
| Gas Vesicle Type |
|
| Diagnostic Inclusion Body Information |
|
| Extracellular Structures |
|
| Bloom Forming |
|
| Pigment Type |
|
| Complementary chromatic adaptation (CCA) |
|
| Medium Types |
|
You are going to add the following user to your project, biosample and study.
Contact Name/Email: Do you want to continue?
You are going to remove permissions for the following user to your project, biosample and study.
Contact Name/Email: Do you want to continue?
Changing the SP visibility will also change visibility on the following items:
Do you want to continue with this visibility change?
Checking that this Sequencing Project can be made private:
Do you want to continue with this visibility change?
Changing the SP Sequencing Strategy will also effect these items:
Do you want to continue with this Sequencing Strategy change?
