Studies
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56,334 |
|
Biosamples
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196,988 |
|
Sequencing Projects
|
525,360 |
|
Analysis Projects
|
384,991 |
| Organisms | 484,221 |
| PROJECT INFORMATION | |
|---|---|
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GOLD Project ID
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Gp0013386
|
|
Project Name
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Gottschalkia acidurici 9a
|
|
Other Names
|
Clostridium acidurici 9a
|
|
Legacy ER Project ID
|
6252
|
|
Legacy GOLD ID
|
Gi17150, Gc02392
|
| NCBI BioProject Name | Clostridium acidurici 9a |
|
NCBI BioProject Accession
|
PRJNA79221 |
|
NCBI Locus Tag
|
CURI
|
|
NCBI BioSample Accession
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|
Source Sample ID
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|
| PI | G2L Team |
| Added By | G2L Team on 2011-12-20 |
| Last Modified By | Supratim Mukherjee on 2017-11-09 |
| Project Comments |
|
|
Project Status
|
Complete and Published
|
|
Project Relevance
|
Biotechnological Model Organism |
|
Sequencing Center
|
Goettingen Genomics Laboratory
(Germany)
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Collaborating Institute
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Funding Agency
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Project Description
|
Clostridium acidiurici is an obligate anaerobic Gram-positive bacterium that is motile and spore-forming. It can be isolated from almost every soil but can also be found in the intestinal tract of birds. It is able to use purines like uric acid as sole carbon, nitrogen and energy source to build ammonia, carbon dioxide and acetic acid. Unlike most other Clostridia it is a specialist and not able to grow on sugars or different other substrates than purines
|
| Is JGI Project |
No
|
|
Project Information Visibility
|
Public |
| PROJECT TYPE | |
|
Specimen
|
Organism |
|
Nucleic Acid
|
DNA |
|
Sequencing Strategy
|
Whole Genome Sequencing
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| EXTERNAL PROJECT LINKS | |
|
JGI Data Utilization Status
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JGI Award DOI
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Genome Publications
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PloS one: 7(12):e51662 The purine-utilizing bacterium Clostridium acidurici 9a: a genome-guided metabolic reconsideration. PubMed: 23240052 DOI: 10.1371/journal.pone.0051662 |
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Other Publications
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Ignored Publications
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Unassigned Publications
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| SRA Experiment |
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| PROJECT COMPOSITION | |
| Study |
Comparative genomics of purinolytic clostridia |
| Organism |
Gottschalkia acidurici 9a |
| Analysis Projects |
Gottschalkia acidurici 9a |
| Number of Analysis Projects (AP) |
1 |
| Number of Derived Analyis Projects (DAP) |
0
|
| SEQUENCING INFORMATION | |
|---|---|
|
Sequencing Status
|
Complete |
| Sequencing Quality (MIGS-31) |
Level 6: Finished |
|
Finishing Goal
|
Level 6: Finished |
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Contamination Screening Input
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|
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DNA Amplification Method
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|
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Single Cell Lysis Protocol
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Single Cell Lysis Approach
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Sequencing Comments
|
|
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DNA Amplification Kit
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|
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Sequencing Technology
(MIGS-29)
|
Sanger 454 GS FLX Titanium |
|
Library Method
(MIGS-28)
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Library Layout
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Library Screening Method
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Number Of Reads
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Read Size
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Vector
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| GC Percent |
30
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| Chromosome Count |
1
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| Plasmid Count |
1
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| ORGANISM NAME | |
|---|---|
| GOLD Organism ID |
Go0013386 |
| Organism Name |
Gottschalkia acidurici 9a
|
| Other names (alias, synonyms, short names, common names) |
Clostridium acidurici 9a
|
| Organism Domain |
BACTERIAL
|
| Phylogeny |
BACILLOTA
|
| Genus |
Gottschalkia
|
| Genus Synonyms |
Clostridium
|
| Species |
Gottschalkia acidurici
|
| Subspecies |
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| Species Synonyms |
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| Strain |
9a
|
| Strain Synonyms |
|
| Serovar/Cultivar |
|
| Culture Collection ID |
DSM 604
|
| Type Strain |
Yes
|
| Exemplar DOI |
10.1601/ex.3885
|
| Exemplar Name |
Gottschalkia acidurici
|
| Taxon DOI |
10.1601/tx.30553
|
| Biosafety Level |
1
|
| Organism Comments |
|
| Cultured |
Yes
|
| Culture Type |
Isolate
|
| Organism Type |
Natural
|
| Uncultured Type |
|
| Commercial Strain |
|
| Commercial Strain Comments |
|
|
ORGANISM TAXONOMY
|
|
| NCBI Taxonomy ID |
1128398 |
| NCBI Superkingdom |
Bacteria
|
| NCBI Kingdom |
|
| NCBI Phylum |
Bacillota
|
| NCBI Class |
Tissierellia
|
| NCBI Order |
Tissierellales
|
| NCBI Family |
Gottschalkiaceae
|
| NCBI Genus |
Gottschalkia
|
| NCBI Species |
Gottschalkia acidurici
|
| ISOLATION CLASSIFICATION | |
| Ecosystem |
Environmental
|
| Ecosystem Category |
Terrestrial
|
| Ecosystem Type |
Soil
|
| Ecosystem Subtype |
Unclassified
|
| Specific Ecosystem |
Unclassified
|
| ORGANISM EXTERNAL REFERENCES | |
| Strain Info ID |
|
| Genbank 16S ID |
HE582772 |
| GENERAL PROPERTIES | |
|---|---|
| Oxygen Requirement |
Obligate anaerobe
|
| Cell Shape |
Rod-shaped
|
| Motility |
Motile
|
| Sporulation |
Sporulating
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| Temperature Range |
Mesophile
|
| Salinity |
|
| pH |
7.4
|
| Cell Diameter |
|
| Cell Length |
|
| Color |
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| Gram Staining |
Gram+
|
| Biotic Relationships |
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| Symbiotic Physical Interaction |
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| Symbiotic Relationship |
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| Symbiont Name |
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| Symbiont Taxon ID |
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| Cell Arrangements |
Singles Filaments |
| Diseases |
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| Known Habitats |
Birds intestinal microflora Soil |
| Metabolisms |
|
| Phenotypes |
|
| Energy Sources |
Heterotroph |
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