PROJECT NAME
GOLD Project ID
Gp0013256  
Project Name
Nakamurella lactea DSM 19367  
Other Names
  
Legacy ER Project ID
21037  
Legacy GOLD ID
Gi11889  
NCBI BioProject Name Nakamurella lactea DSM 19367
NCBI BioProject ID 195807
NCBI BioProject Accession
PRJNA195807  
NCBI Locus Tag
K340  
NCBI BioSample Accession
SAMN02440642  
PI Nikos Kyrpides
Added By JGI automated process on 2012-01-11
Last Modified By Jyothi Mallajosyula on 2014-10-17
Project Comments
  
PROJECT TYPE
Specimen Organism
Nucleic Acid DNA
Sequencing Strategy
Whole Genome Sequencing  
PROJECT INFORMATION
Project Status
Permanent Draft  
Project Relevance GEBA-KMG
Tree of Life
Sequencing Center DOE Joint Genome Institute (JGI) (USA)
Collaborating Institute Leibniz Institute (Germany)
Funding Agency Leibniz Institute (Germany)
U.S. Department of Energy (DOE) (USA)
Project Description
Genomic Encyclopedia of Type Strains, Phase I: one thousand microbial genomes (KMG) project. The goal of the Genomic Encyclopedia of Bacteria and Archaea (GEBA) initiative is to sequence genomes to fill phylogenetic gaps, generating reference genomes for every major and minor group of bacteria and archaea. Currently sequenced genomes have provided highly uneven coverage of the type strain material present in public culture collections. The Microbial Earth Project is an initiative of the Microbial Genomics Program of the DOE Joint Genome Institute that focuses on 1000 Type strains from the DSMZ and ATCC repositories.  
Project Information Visibility
Public  
EXTERNAL PROJECT LINKS
JGI Portal Download Raw Sequence Data
Project Information
  
Database
  
Genome Publications
  
Other Publications
  
Isolation Publications
  
NCBI SRA ID
  
PROJECT COMPOSITION
Studies Genomic Encyclopedia of Type Strains, Phase I: the one thousand microbial genomes (KMG-I) project
Analysis Projects Nakamurella lactea DSM 19367
SEQUENCING INFORMATION
Sequencing Status Draft
Sequencing Quality (MIGS-31) Level 1: Standard Draft
Finishing Goal Level 1: Standard Draft
Sequencing Comments
  
Sequencing Technology (MIGS-29) Illumina
Illumina HiSeq 2000
Illumina HiSeq 2500
Library Method (MIGS-28)
Illumina Regular Fragment, 270bp  
Number Of Reads
  
Read Size
  
Vector
  
GC Percent
69  
Chromosome Count
  
Plasmid Count
  
ORGANISM NAME
GOLD Organism ID Go0013256
Organism Name
Nakamurella lactea DSM 19367  
Other names (alias, synonyms, short names, common names)
  
Organism Domain
BACTERIAL  
Phylogeny
ACTINOBACTERIA  
Genus
Nakamurella  
Genus Synonyms
  
Species
Nakamurella lactea  
Subspecies
  
Species Synonyms
  
Strain
DSM 19367  
Strain Synonyms
  
Serovar-Biovar
  
Culture Collection ID
DSM 19367  
Type Strain
Yes  
Exemplar DOI
10.1601/ex.13771  
Exemplar Name
Saxeibacter lacteus  
Taxon DOI
10.1601/tx.13771  
Biosafety Level
  
Organism Comments
  
Cultured
Yes  
Culture Type
Isolate  
Organism Type
Natural  
Uncultured Type
  
Commercial Strain
  
Commercial Strain Comments
  
ORGANISM TAXONOMY
NCBI Taxonomy ID 1123241
NCBI Kingdom
  
NCBI Phylum
Actinobacteria  
NCBI Class
Actinobacteria  
NCBI Order
Nakamurellales  
NCBI Family
Nakamurellaceae  
NCBI Genus
Nakamurella  
NCBI Species
Nakamurella lactea  
ISOLATION CLASSIFICATION
Ecosystem
Environmental  
Ecosystem Category
Terrestrial  
Ecosystem Type
Geologic  
Ecosystem Subtype
Unclassified  
Specific Ecosystem
Unclassified  
ORGANISM EXTERNAL REFERENCES
Strain Info ID 802430
Genbank 16S ID
Synonym List
  
GENERAL PROPERTIES
Oxygen Requirement
Aerobe  
Cell Shape
Rod-shaped  
Motility
Nonmotile  
Sporulation
  
Temperature Range
Psychrotolerant  
Temperature Optimum
  
Salinity
  
pH
5.1-9.1  
Cell Diameter
0.4-0.7 um  
Cell Length
0.9-1.0 um  
Color
  
Gram Staining
Gram+  
Biotic Relationships
ID 3
Term Free living
Symbiotic Physical Interaction
  
Symbiotic Relationship
  
Symbiont Name
  
Symbiont Taxon ID
  
Cell Arrangements
  
Diseases
  
Known Habitats Rock
Metabolisms Nitrate reducer
Phenotypes Catalase positive
Energy Sources
  
CYANOBACTERIA METADATA
Filaments
  
Filament Type
  
Differentiated Cells
  
Position Of Heterocysts
  
Cysts
  
Mode Of Reproduction
  
Trichome
  
Trichome Type
  
Carotenoids
  
Pigments
  
Phage Infectivity
  
Phage Type
  
Restriction Enzyme
  
Toxin Production
  
Toxin Type
  
Secondary Metabolites
  
Developmental Cycle
  
Branching
  
Gas Vesicles
  
Gas Vesicle Type
  
Diagnostic Inclusion Body Information
  
Extracellular Structures
  
Bloom Forming
  
Pigment Type
  
Complementary chromatic adaptation (CCA)
  
Medium Types
  

 

 

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