PROJECT INFORMATION
GOLD Project ID
Gp0013232  
Project Name
Rubritalea squalenifaciens DSM 18772  
Other Names
  
Legacy ER Project ID
21014  
Legacy GOLD ID
Gi11866  
NCBI BioProject Name Rubritalea squalenifaciens DSM 18772
NCBI BioProject ID 245716
NCBI BioProject Accession PRJNA245716
NCBI Locus Tag
EJ93  
NCBI BioSample Accession SAMN02745181
PI Nikos Kyrpides
Added By JGI automated process on 2012-01-11
Last Modified By JGI automated process on 2019-09-30
Project Comments
  
Project Status
Permanent Draft  
Project Relevance Tree of Life
GEBA-KMG
Sequencing Center DOE Joint Genome Institute (JGI) (USA)
Collaborating Institute
  
Funding Agency U.S. Department of Energy (DOE) (USA)
Project Description
Genomic Encyclopedia of Type Strains, Phase I: one thousand microbial genomes (KMG) project. The goal of the Genomic Encyclopedia of Bacteria and Archaea (GEBA) initiative is to sequence genomes to fill phylogenetic gaps, generating reference genomes for every major and minor group of bacteria and archaea. Currently sequenced genomes have provided highly uneven coverage of the type strain material present in public culture collections. The Microbial Earth Project is an initiative of the Microbial Genomics Program of the DOE Joint Genome Institute that focuses on 1000 Type strains from the DSMZ and ATCC repositories.  
Is JGI Project
Yes  
Project Information Visibility Public
PROJECT TYPE
Specimen Organism
Nucleic Acid DNA
Sequencing Strategy
Whole Genome Sequencing  
EXTERNAL PROJECT LINKS
JGI Portal Download Raw Sequence Data
Project Information
  
Database
  
Genome Publications
  
Other Publications
  
SRA Experiment
 
SRA Experiment Id SRX2065964  (Link to NCBI )
Experiment Title Rubritalea squalenifaciens DSM 18772
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection RANDOM
Library Name XYTP
Library Layout PAIRED
Library Instrument ILLUMINA_HI_SEQ_2000
PROJECT COMPOSITION
Study Genomic Encyclopedia of Type Strains, Phase I: the one thousand microbial genomes (KMG-I) project
Organism Rubritalea squalenifaciens DSM 18772
Analysis Projects Rubritalea squalenifaciens DSM 18772
Number of Analysis Projects 1
Number of DAPs
0  
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality (MIGS-31) Level 1: Standard Draft
Finishing Goal Level 1: Standard Draft
Sequencing Comments
  
Sequencing Technology (MIGS-29) Illumina HiSeq 2500
Illumina HiSeq 2000
Library Method (MIGS-28)
Illumina Regular Fragment, 300bp, Plates  
Number Of Reads
  
Read Size
  
Vector
  
GC Percent
  
Chromosome Count
  
Plasmid Count
  
ORGANISM NAME
GOLD Organism ID Go0013232
Organism Name
Rubritalea squalenifaciens DSM 18772  
Other names (alias, synonyms, short names, common names)
  
Organism Domain
BACTERIAL  
Phylogeny
VERRUCOMICROBIA  
Genus
Rubritalea  
Genus Synonyms
  
Species
Rubritalea squalenifaciens  
Subspecies
  
Species Synonyms
  
Strain
DSM 18772  
Strain Synonyms
  
Serovar/Cultivar
  
Culture Collection ID
DSM 18772  
Type Strain
Yes  
Exemplar DOI
10.1601/ex.11263  
Exemplar Name
Rubritalea squalenifaciens  
Taxon DOI
10.1601/tx.11263  
Biosafety Level
  
Organism Comments
  
Cultured
Yes  
Culture Type
Isolate  
Organism Type
Natural  
Uncultured Type
  
Commercial Strain
  
Commercial Strain Comments
  
ORGANISM TAXONOMY
NCBI Taxonomy ID 1123071
NCBI Superkingdom
Bacteria  
NCBI Kingdom
  
NCBI Phylum
Verrucomicrobia  
NCBI Class
Verrucomicrobiae  
NCBI Order
Verrucomicrobiales  
NCBI Family
Rubritaleaceae  
NCBI Genus
Rubritalea  
NCBI Species
Rubritalea squalenifaciens  
ISOLATION CLASSIFICATION
Ecosystem
Host-associated  
Ecosystem Category
Unclassified  
Ecosystem Type
Unclassified  
Ecosystem Subtype
Unclassified  
Specific Ecosystem
Unclassified  
ORGANISM EXTERNAL REFERENCES
Strain Info ID 720834
Genbank 16S ID AB277853
GENERAL PROPERTIES
Oxygen Requirement
Aerobe  
Cell Shape
Rod-shaped  
Motility
Nonmotile  
Sporulation
  
Temperature Range
Mesophile  
Salinity
  
pH
7.5-8.5  
Cell Diameter
0.44-0.53 um  
Cell Length
0.65-0.79 um  
Color
  
Gram Staining
Gram-  
Biotic Relationships
  
Symbiotic Physical Interaction
  
Symbiotic Relationship
  
Symbiont Name
  
Symbiont Taxon ID
  
Cell Arrangements
  
Diseases
  
Known Habitats Marine
Aquatic
Host
Metabolisms
  
Phenotypes Catalase positive
Energy Sources Heterotroph

 

 

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