PROJECT INFORMATION
GOLD Project ID
Gp0013220  
Project Name
Rhodonellum psychrophilum DSM 17998  
Other Names
  
Legacy ER Project ID
21002  
Legacy GOLD ID
Gi11854  
NCBI BioProject Name Rhodonellum psychrophilum GCM71 = DSM 17998
NCBI BioProject Accession PRJNA183058
NCBI Locus Tag
F824  
NCBI BioSample Accession SAMN02441658
Source Sample ID
PI Nikos Kyrpides
Added By JGI automated process on 2012-01-11
Last Modified By JGI automated process on 2022-09-07
Project Comments
  
Project Status
Permanent Draft  
Project Relevance Tree of Life
GEBA-KMG
Sequencing Center DOE Joint Genome Institute (JGI) (USA)
Collaborating Institute Leibniz Institute (Germany)
Funding Agency U.S. Department of Energy (DOE) (USA)
Leibniz Institute (Germany)
Project Description
Genomic Encyclopedia of Type Strains, Phase I: one thousand microbial genomes (KMG) project. The goal of the Genomic Encyclopedia of Bacteria and Archaea (GEBA) initiative is to sequence genomes to fill phylogenetic gaps, generating reference genomes for every major and minor group of bacteria and archaea. Currently sequenced genomes have provided highly uneven coverage of the type strain material present in public culture collections. The Microbial Earth Project is an initiative of the Microbial Genomics Program of the DOE Joint Genome Institute that focuses on 1000 Type strains from the DSMZ and ATCC repositories.  
Is JGI Project
Yes  
Project Information Visibility Public
PROJECT TYPE
Specimen Organism
Nucleic Acid DNA
Sequencing Strategy
Whole Genome Sequencing  
EXTERNAL PROJECT LINKS
JGI Data Utilization Status
Unrestricted  
JGI Award DOI 10.46936/10.25585/60000886
JGI Portal Download Raw Sequence Data
Genome Publications Nature biotechnology: 35(7):676-683 1,003 reference genomes of bacterial and archaeal isolates expand coverage of the tree of life.
PubMed: 28604660 DOI: 10.1038/nbt.3886
Other Publications
  
Ignored Publications
  
Unassigned Publications
  
SRA Experiment
  
PROJECT COMPOSITION
Study Genomic Encyclopedia of Type Strains, Phase I: the one thousand microbial genomes (KMG-I) project
Organism Rhodonellum psychrophilum GCM71, DSM 17998
Analysis Projects Rhodonellum psychrophilum DSM 17998
Number of Analysis Projects (AP) 1
Number of Derived Analyis Projects (DAP)
0  
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality (MIGS-31) Level 1: Standard Draft
Finishing Goal Level 1: Standard Draft
Contamination Screening Input
  
DNA Amplification Method
  
Single Cell Lysis Protocol
  
Single Cell Lysis Approach
  
Sequencing Comments
  
DNA Amplification Kit
  
Sequencing Technology (MIGS-29) Illumina HiSeq 2500
Library Method (MIGS-28)
  
Library Layout
  
Library Screening Method
  
Number Of Reads
  
Read Size
  
Vector
  
GC Percent
42  
Chromosome Count
  
Plasmid Count
  
ORGANISM NAME
GOLD Organism ID Go0013220
Organism Name
Rhodonellum psychrophilum GCM71, DSM 17998  
Other names (alias, synonyms, short names, common names)
  
Organism Domain
BACTERIAL  
Phylogeny
BACTEROIDETES  
Genus
Rhodonellum  
Genus Synonyms
  
Species
Rhodonellum psychrophilum  
Subspecies
  
Species Synonyms
  
Strain
GCM71  
Strain Synonyms
  
Serovar/Cultivar
  
Culture Collection ID
DSM 17998  
Type Strain
Yes  
Exemplar DOI
10.1601/ex.10995  
Exemplar Name
Rhodonellum psychrophilum  
Taxon DOI
10.1601/tx.10995  
Biosafety Level
  
Organism Comments
  
Cultured
Yes  
Culture Type
Isolate  
Organism Type
Natural  
Uncultured Type
  
Commercial Strain
  
Commercial Strain Comments
  
ORGANISM TAXONOMY
NCBI Taxonomy ID 1123057
NCBI Superkingdom
Bacteria  
NCBI Kingdom
  
NCBI Phylum
Bacteroidota  
NCBI Class
Cytophagia  
NCBI Order
Cytophagales  
NCBI Family
Cytophagaceae  
NCBI Genus
Rhodonellum  
NCBI Species
Rhodonellum psychrophilum  
ISOLATION CLASSIFICATION
Ecosystem
Environmental  
Ecosystem Category
Terrestrial  
Ecosystem Type
Geologic  
Ecosystem Subtype
Unclassified  
Specific Ecosystem
Unclassified  
ORGANISM EXTERNAL REFERENCES
Strain Info ID 690429
Genbank 16S ID DQ112660
GENERAL PROPERTIES
Oxygen Requirement
Aerobe  
Cell Shape
Rod-shaped  
Motility
Nonmotile  
Sporulation
  
Temperature Range
Psychrophile  
Salinity
  
pH
7.5  
Cell Diameter
0.7-1.0 um  
Cell Length
0.8-3.0 um  
Color
Red  
Gram Staining
Gram-  
Biotic Relationships
  
Symbiotic Physical Interaction
  
Symbiotic Relationship
  
Symbiont Name
  
Symbiont Taxon ID
  
Cell Arrangements
  
Diseases
  
Known Habitats Rock
Endolithic
Submarine
Arctic
Metabolisms
  
Phenotypes Alkaliphile
Energy Sources Chemoheterotroph
CYANOBACTERIA METADATA
Filaments
  
Filament Type
  
Differentiated Cells
  
Position Of Heterocysts
  
Cysts
  
Mode Of Reproduction
  
Trichome
  
Trichome Type
  
Carotenoids
  
Pigments
  
Phage Infectivity
  
Phage Type
  
Restriction Enzyme
  
Toxin Production
  
Toxin Type
  
Secondary Metabolites
  
Developmental Cycle
  
Branching
  
Gas Vesicles
  
Gas Vesicle Type
  
Diagnostic Inclusion Body Information
  
Extracellular Structures
  
Bloom Forming
  
Pigment Type
  
Complementary chromatic adaptation (CCA)
  
Medium Types
  

 

 

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