PROJECT INFORMATION
GOLD Project ID
Gp0012800  
Project Name
Schaalia georgiae F0490  
Other Names
  
Legacy ER Project ID
6177  
Legacy GOLD ID
Gi10956  
NCBI BioProject Name Actinomyces georgiae F0490
NCBI BioProject Accession PRJNA78895
NCBI Locus Tag
HMPREF1317  
NCBI BioSample Accession SAMN00792232
PI Dodson R.
Added By Ionna Pagani on 2011-11-29
Last Modified By Supratim Mukherjee on 2019-06-05
Project Comments
  
Project Status
Permanent Draft  
Project Relevance Human Microbiome Project (HMP)
Medical
Sequencing Center J. Craig Venter Institute
Collaborating Institute
  
Funding Agency NIH (USA)
Project Description
HMP reference genome  
Is JGI Project
No  
Project Information Visibility Public
PROJECT TYPE
Specimen Organism
Nucleic Acid DNA
Sequencing Strategy
Whole Genome Sequencing  
EXTERNAL PROJECT LINKS
JGI Data Utilization Status
  
JGI Award DOI
Genome Publications
  
Other Publications
  
Ignored Publications
  
Unassigned Publications
  
SRA Experiment
 
SRA Experiment Id SRX121874  (Link to NCBI )
Experiment Title 1132491721382 HMP289 Actinomyces georgiae F0490 HMP289-PE-ILI76-1 Experiment
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection RANDOM
Library Name HMP289-PE-ILI76-1
Library Layout PAIRED
Library Instrument ILLUMINA_GENOME_ANALYZER_II
Spot Length 200
PROJECT COMPOSITION
Study Human Microbiome Project (HMP) Reference Genomes
Organism Schaalia georgiae F0490
Analysis Projects Schaalia georgiae F0490
Number of Analysis Projects (AP) 1
Number of Derived Analyis Projects (DAP)
0  
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality (MIGS-31) Level 2: High-Quality Draft
Finishing Goal
Contamination Screening Input
  
DNA Amplification Method
  
Single Cell Lysis Protocol
  
Single Cell Lysis Approach
  
Sequencing Comments
  
DNA Amplification Kit
  
Sequencing Technology (MIGS-29) Illumina HiSeq 2000
Library Method (MIGS-28)
  
Library Layout
  
Library Screening Method
  
Number Of Reads
843048  
Read Size
  
Vector
  
GC Percent
70  
Chromosome Count
  
Plasmid Count
  
ORGANISM NAME
GOLD Organism ID Go0012800
Organism Name
Schaalia georgiae F0490  
Other names (alias, synonyms, short names, common names)
  
Organism Domain
BACTERIAL  
Phylogeny
ACTINOBACTERIA  
Genus
Schaalia  
Genus Synonyms
  
Species
Schaalia georgiae  
Subspecies
  
Species Synonyms
  
Strain
F0490  
Strain Synonyms
  
Serovar/Cultivar
  
Culture Collection ID
BEI HM-813  
Type Strain
Unknown  
Exemplar DOI
  
Exemplar Name
  
Taxon DOI
  
Biosafety Level
  
Organism Comments
  
Cultured
Yes  
Culture Type
Isolate  
Organism Type
Natural  
Uncultured Type
  
Commercial Strain
  
Commercial Strain Comments
  
ORGANISM TAXONOMY
NCBI Taxonomy ID 1125717
NCBI Superkingdom
Bacteria  
NCBI Kingdom
  
NCBI Phylum
Actinobacteria  
NCBI Class
Actinomycetia  
NCBI Order
Actinomycetales  
NCBI Family
Actinomycetaceae  
NCBI Genus
Schaalia  
NCBI Species
Schaalia georgiae  
ISOLATION CLASSIFICATION
Ecosystem
Host-associated  
Ecosystem Category
Mammals: Human  
Ecosystem Type
Digestive system  
Ecosystem Subtype
Oral cavity  
Specific Ecosystem
Unclassified  
ORGANISM EXTERNAL REFERENCES
Strain Info ID
Genbank 16S ID
GENERAL PROPERTIES
Oxygen Requirement
  
Cell Shape
  
Motility
  
Sporulation
  
Temperature Range
Mesophile  
Salinity
  
pH
  
Cell Diameter
  
Cell Length
  
Color
  
Gram Staining
Gram+  
Biotic Relationships
  
Symbiotic Physical Interaction
  
Symbiotic Relationship
  
Symbiont Name
  
Symbiont Taxon ID
  
Cell Arrangements
  
Diseases
  
Known Habitats Host
Human oral cavity
Metabolisms
  
Phenotypes
  
Energy Sources Heterotroph
HMP METADATA
HMP ID
1317  
Show in DACC?
Yes  
HMP Project Status
Complete  
BEI Status
  
NCBI Submission Status
6. annotation (and sequence) public on NCBI site  
Isolate Suggestion Source
  
HMP Isolation Body Sample Site
Oral  
HMP Isolation Body Sample Subsite
  
HMP Finishing Goal
  
Source, Sample & Medical Relevance Comments
  
Isolate Availability Comments
  
Project Comments
  
DNA Received
Yes  
Date DNA Received
2011-07-14  
Date Sequencing Begins
2011-09-07  
Date Draft Sequencing Completed
2011-10-03  
Cross Reference ID
  

 

 

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