Studies
|
56,122 |
|
Biosamples
|
195,527 |
|
Sequencing Projects
|
519,932 |
|
Analysis Projects
|
381,637 |
| Organisms | 480,441 |
| PROJECT INFORMATION | |||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
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GOLD Project ID
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Gp0012800
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Project Name
|
Schaalia georgiae F0490
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Other Names
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Legacy ER Project ID
|
6177
|
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Legacy GOLD ID
|
Gi10956
|
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| NCBI BioProject Name | Actinomyces georgiae F0490 | ||||||||||||||||||||
|
NCBI BioProject Accession
|
PRJNA78895 |
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|
NCBI Locus Tag
|
HMPREF1317
|
||||||||||||||||||||
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NCBI BioSample Accession
|
SAMN00792232 |
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Source Sample ID
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| PI | Dodson R. | ||||||||||||||||||||
| Added By | Ionna Pagani on 2011-11-29 | ||||||||||||||||||||
| Last Modified By | Supratim Mukherjee on 2019-06-05 | ||||||||||||||||||||
| Project Comments |
|
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Project Status
|
Permanent Draft
|
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Project Relevance
|
Human Microbiome Project (HMP) Medical |
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Sequencing Center
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J. Craig Venter Institute
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Collaborating Institute
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Funding Agency
|
NIH
(USA)
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Project Description
|
HMP reference genome
|
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| Is JGI Project |
No
|
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Project Information Visibility
|
Public | ||||||||||||||||||||
| PROJECT TYPE | |||||||||||||||||||||
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Specimen
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Organism |
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Nucleic Acid
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DNA |
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Sequencing Strategy
|
Whole Genome Sequencing
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| EXTERNAL PROJECT LINKS | |||||||||||||||||||||
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JGI Data Utilization Status
|
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JGI Award DOI
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Genome Publications
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Other Publications
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Ignored Publications
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Unassigned Publications
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| SRA Experiment |
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| PROJECT COMPOSITION | |||||||||||||||||||||
| Study |
Human Microbiome Project (HMP) Reference Genomes |
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| Organism |
Schaalia georgiae F0490 |
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| Analysis Projects |
Schaalia georgiae F0490 |
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| Number of Analysis Projects (AP) |
1 |
||||||||||||||||||||
| Number of Derived Analyis Projects (DAP) |
0
|
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| SEQUENCING INFORMATION | |
|---|---|
|
Sequencing Status
|
Complete |
| Sequencing Quality (MIGS-31) |
Level 2: High-Quality Draft |
|
Finishing Goal
|
|
|
Contamination Screening Input
|
|
|
DNA Amplification Method
|
|
|
Single Cell Lysis Protocol
|
|
|
Single Cell Lysis Approach
|
|
|
Sequencing Comments
|
|
|
DNA Amplification Kit
|
|
|
Sequencing Technology
(MIGS-29)
|
Illumina HiSeq 2000 |
|
Library Method
(MIGS-28)
|
|
|
Library Layout
|
|
|
Library Screening Method
|
|
|
Number Of Reads
|
843048
|
|
Read Size
|
|
|
Vector
|
|
| GC Percent |
70
|
| Chromosome Count |
|
| Plasmid Count |
|
| ORGANISM NAME | |
|---|---|
| GOLD Organism ID |
Go0012800 |
| Organism Name |
Schaalia georgiae F0490
|
| Other names (alias, synonyms, short names, common names) |
|
| Organism Domain |
BACTERIAL
|
| Phylogeny |
ACTINOMYCETOTA
|
| Genus |
Schaalia
|
| Genus Synonyms |
|
| Species |
Schaalia georgiae
|
| Subspecies |
|
| Species Synonyms |
|
| Strain |
F0490
|
| Strain Synonyms |
|
| Serovar/Cultivar |
|
| Culture Collection ID |
BEI HM-813
|
| Type Strain |
Unknown
|
| Exemplar DOI |
|
| Exemplar Name |
|
| Taxon DOI |
|
| Biosafety Level |
|
| Organism Comments |
|
| Cultured |
Yes
|
| Culture Type |
Isolate
|
| Organism Type |
Natural
|
| Uncultured Type |
|
| Commercial Strain |
|
| Commercial Strain Comments |
|
|
ORGANISM TAXONOMY
|
|
| NCBI Taxonomy ID |
1125717 |
| NCBI Superkingdom |
Bacteria
|
| NCBI Kingdom |
|
| NCBI Phylum |
Actinomycetota
|
| NCBI Class |
Actinomycetes
|
| NCBI Order |
Actinomycetales
|
| NCBI Family |
Actinomycetaceae
|
| NCBI Genus |
Schaalia
|
| NCBI Species |
Schaalia georgiae
|
| ISOLATION CLASSIFICATION | |
| Ecosystem |
Host-associated
|
| Ecosystem Category |
Mammals: Human
|
| Ecosystem Type |
Digestive system
|
| Ecosystem Subtype |
Oral cavity
|
| Specific Ecosystem |
Unclassified
|
| ORGANISM EXTERNAL REFERENCES | |
| Strain Info ID |
|
| Genbank 16S ID |
|
| GENERAL PROPERTIES | |
|---|---|
| Oxygen Requirement |
|
| Cell Shape |
|
| Motility |
|
| Sporulation |
|
| Temperature Range |
Mesophile
|
| Salinity |
|
| pH |
|
| Cell Diameter |
|
| Cell Length |
|
| Color |
|
| Gram Staining |
Gram+
|
| Biotic Relationships |
|
| Symbiotic Physical Interaction |
|
| Symbiotic Relationship |
|
| Symbiont Name |
|
| Symbiont Taxon ID |
|
| Cell Arrangements |
|
| Diseases |
|
| Known Habitats |
Host Human oral cavity |
| Metabolisms |
|
| Phenotypes |
|
| Energy Sources |
Heterotroph |
| HMP METADATA | |
|---|---|
| HMP ID |
1317
|
| Show in DACC? |
Yes
|
| HMP Project Status |
Complete
|
| BEI Status |
|
| NCBI Submission Status |
6. annotation (and sequence) public on NCBI site
|
| Isolate Suggestion Source |
|
| HMP Isolation Body Sample Site |
Oral
|
| HMP Isolation Body Sample Subsite |
|
| HMP Finishing Goal |
|
| Source, Sample & Medical Relevance Comments |
|
| Isolate Availability Comments |
|
| Project Comments |
|
| DNA Received |
Yes
|
| Date DNA Received |
2011-07-14
|
| Date Sequencing Begins |
2011-09-07
|
| Date Draft Sequencing Completed |
2011-10-03
|
| Cross Reference ID |
|
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