PROJECT INFORMATION
GOLD Project ID
Gp0012786  
Project Name
Mastigocladopsis repens PCC 10914  
Other Names
  
Legacy ER Project ID
6055  
Legacy GOLD ID
Gi17671, Gi12081  
NCBI BioProject Name Mastigocladopsis repens PCC 10914
NCBI BioProject ID 158735
NCBI BioProject Accession PRJNA158735
NCBI Locus Tag
Mas10914  
NCBI BioSample Accession SAMN02261251
PI Cheryl Kerfeld
Added By Ionna Pagani on 2011-11-10
Last Modified By JGI automated process on 2014-08-18
Project Comments
  
Project Status
Permanent Draft  
Project Relevance GEBA-PCC
Sequencing Center DOE Joint Genome Institute (JGI) (USA)
Collaborating Institute
  
Funding Agency U.S. Department of Energy (DOE) (USA)
Project Description
The CyanoGEBA Sequencing Project is part of the DOE Joint Genome Institute?s Genomic Encyclopedia of Bacteria and Archaea initiative. The CyanoGEBA project is a collaboration between the JGI and the Pasteur Culture Collection aimed at improving sequencing coverage of the cyanobacterial phylum based on phylogenetic criteria  
Is JGI Project
Yes  
Project Information Visibility Public
PROJECT TYPE
Specimen Organism
Nucleic Acid DNA
Sequencing Strategy
Whole Genome Sequencing  
EXTERNAL PROJECT LINKS
JGI Portal Download Raw Sequence Data
Project Information
  
Database
  
Genome Publications Proceedings of the National Academy of Sciences of the United States of America 110(3):1053-8 Improving the coverage of the cyanobacterial phylum using diversity-driven genome sequencing.

Other Publications
  
SRA Experiment
  
PROJECT COMPOSITION
Study GEBA-PCC
Organism Mastigocladopsis repens PCC 10914
Analysis Projects Mastigocladopsis repens PCC 10914
Number of Analysis Projects 1
Number of DAPs
0  
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality (MIGS-31) Level 3: Improved-High-Quality Draft
Finishing Goal Level 2: High-Quality Draft
Sequencing Comments
  
Sequencing Technology (MIGS-29) Illumina HiSeq 2000
Library Method (MIGS-28)
  
Number Of Reads
  
Read Size
  
Vector
  
GC Percent
44  
Chromosome Count
  
Plasmid Count
  
ORGANISM NAME
GOLD Organism ID Go0012786
Organism Name
Mastigocladopsis repens PCC 10914  
Other names (alias, synonyms, short names, common names)
  
Organism Domain
BACTERIAL  
Phylogeny
CYANOBACTERIA  
Genus
Mastigocladopsis  
Genus Synonyms
  
Species
Mastigocladopsis repens  
Subspecies
  
Species Synonyms
  
Strain
PCC 10914  
Strain Synonyms
  
Serovar/Cultivar
  
Culture Collection ID
PCC 10914  
Type Strain
Unknown  
Exemplar DOI
  
Exemplar Name
  
Taxon DOI
  
Biosafety Level
  
Organism Comments
  
Cultured
Yes  
Culture Type
Isolate  
Organism Type
Natural  
Uncultured Type
  
Commercial Strain
  
Commercial Strain Comments
  
ORGANISM TAXONOMY
NCBI Taxonomy ID 221288
NCBI Superkingdom
Bacteria  
NCBI Kingdom
  
NCBI Phylum
Cyanobacteria  
NCBI Class
  
NCBI Order
Nostocales  
NCBI Family
Symphyonemataceae  
NCBI Genus
Mastigocladopsis  
NCBI Species
Mastigocladopsis repens  
ISOLATION CLASSIFICATION
Ecosystem
  
Ecosystem Category
  
Ecosystem Type
  
Ecosystem Subtype
  
Specific Ecosystem
  
ORGANISM EXTERNAL REFERENCES
Strain Info ID
Genbank 16S ID
GENERAL PROPERTIES
Oxygen Requirement
  
Cell Shape
  
Motility
  
Sporulation
  
Temperature Range
  
Salinity
  
pH
  
Cell Diameter
  
Cell Length
  
Color
  
Gram Staining
Gram-  
Biotic Relationships
  
Symbiotic Physical Interaction
  
Symbiotic Relationship
  
Symbiont Name
  
Symbiont Taxon ID
  
Cell Arrangements
  
Diseases
  
Known Habitats
  
Metabolisms
  
Phenotypes
  
Energy Sources
  

 

 

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