PROJECT INFORMATION
GOLD Project ID
Gp0012760  
Project Name
Candidatus Arthromitus sp. SFB-rat-Yit  
Other Names
  
Legacy ER Project ID
20064  
Legacy GOLD ID
Gc02007  
NCBI BioProject Name Candidatus Arthromitus sp. SFB-rat-Yit
NCBI BioProject ID 67837
NCBI BioProject Accession PRJDA67837
NCBI Locus Tag
RATSFB  
NCBI BioSample Accession SAMD00016607
PI Hattori M
Added By Nikos Kyrpides on 2011-10-21
Last Modified By Supratim Mukherjee on 2018-07-09
Project Comments
  
Project Status
Complete and Published  
Project Relevance Medical
Sequencing Center University of Tokyo (Japan)
Collaborating Institute
  
Funding Agency
  
Project Description
Candidatus Arthromitus sp. SFB-rat-Yit genome sequencing project  
Project Information Visibility Public
PROJECT TYPE
Specimen Organism
Nucleic Acid DNA
Sequencing Strategy
Whole Genome Sequencing  
EXTERNAL PROJECT LINKS
Project Information
  
Database
  
Genome Publications Cell host & microbe 10(3):273-84 Complete genome sequences of rat and mouse segmented filamentous bacteria, a potent inducer of th17 cell differentiation.
Other Publications
  
PROJECT COMPOSITION
Study Candidatus Arthromitus sp. SFB-rat-Yit
Analysis Projects Candidatus Arthromitus sp. SFB-rat-Yit
Number of Analysis Projects 1
Number of DAPs
0  
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality (MIGS-31) Level 6: Finished
Finishing Goal
  
Sequencing Comments
  
Sequencing Technology (MIGS-29) Sanger
454
Library Method (MIGS-28)
  
Number Of Reads
  
Read Size
  
Vector
  
GC Percent
28  
Chromosome Count
1  
Plasmid Count
0  
ORGANISM NAME
GOLD Organism ID Go0012760
Organism Name
Candidatus Arthromitus sp. SFB-rat-Yit  
Other names (alias, synonyms, short names, common names)
  
Organism Domain
BACTERIAL  
Phylogeny
FIRMICUTES  
Genus
  
Genus Synonyms
  
Species
Candidatus Arthromitus sp. SFB-rat-Yit  
Subspecies
  
Species Synonyms
  
Strain
SFB-rat-Yit  
Strain Synonyms
  
Serovar-Biovar
  
Culture Collection ID
  
Type Strain
Unknown  
Exemplar DOI
  
Exemplar Name
  
Taxon DOI
  
Biosafety Level
  
Organism Comments
  
Cultured
No  
Culture Type
  
Organism Type
Natural  
Uncultured Type
Population enrichment  
Commercial Strain
  
Commercial Strain Comments
  
ORGANISM TAXONOMY
NCBI Taxonomy ID 1041504
NCBI Superkingdom
Bacteria  
NCBI Kingdom
  
NCBI Phylum
Firmicutes  
NCBI Class
Clostridia  
NCBI Order
Clostridiales  
NCBI Family
Clostridiaceae  
NCBI Genus
Candidatus Arthromitus  
NCBI Species
Candidatus Arthromitus sp. SFB-rat-Yit  
ISOLATION CLASSIFICATION
Ecosystem
Host-associated  
Ecosystem Category
Mammals  
Ecosystem Type
Unclassified  
Ecosystem Subtype
Unclassified  
Specific Ecosystem
Unclassified  
ORGANISM EXTERNAL REFERENCES
Strain Info ID
Genbank 16S ID
Synonym List
  
GENERAL PROPERTIES
Oxygen Requirement
  
Cell Shape
  
Motility
  
Sporulation
  
Temperature Range
  
Temperature Optimum
  
Salinity
  
pH
  
Cell Diameter
  
Cell Length
  
Color
  
Gram Staining
Gram+  
Biotic Relationships
  
Symbiotic Physical Interaction
  
Symbiotic Relationship
  
Symbiont Name
  
Symbiont Taxon ID
  
Cell Arrangements
  
Diseases
  
Known Habitats Host
Metabolisms
  
Phenotypes Commensal
Energy Sources
  

 

 

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