PROJECT INFORMATION
GOLD Project ID
Gp0012638  
Project Name
Propionimicrobium sp. BV2F7  
Other Names
  
Legacy ER Project ID
20047  
Legacy GOLD ID
Gi10854  
NCBI BioProject Name Propionimicrobium sp. BV2F7
NCBI BioProject ID 89641
NCBI BioProject Accession PRJNA89641
NCBI Locus Tag
HMPREF1255  
NCBI BioSample Accession SAMN00829146
PI Dodson R.
Added By Ionna Pagani on 2011-10-10
Last Modified By JGI automated process on 2014-03-26
Project Comments
  
Project Status
Permanent Draft  
Project Relevance Human Microbiome Project (HMP)
Medical
Sequencing Center J. Craig Venter Institute (JCVI) (USA)
Collaborating Institute
  
Funding Agency NIH (USA)
Project Description
Human Microbiome Project (HMP) Reference Genome  
Is JGI Project
No  
Project Information Visibility Public
PROJECT TYPE
Specimen Organism
Nucleic Acid DNA
Sequencing Strategy
Whole Genome Sequencing  
EXTERNAL PROJECT LINKS
Project Information
  
Database
  
Genome Publications
  
Other Publications
  
SRA Experiment
 
SRA Experiment Id SRX130415  (Link to NCBI )
Experiment Title 1132492375151 HMP335 Propionimicrobium sp. BV2F7 HMP335-RLB-RL049-01-950 Experiment
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection RANDOM
Library Name HMP335-RLB-RL049-01-950
Library Layout SINGLE
Library Instrument 454 GS FLX Titanium
PROJECT COMPOSITION
Study Human Microbiome Project (HMP) Reference Genomes
Organism Propionimicrobium sp. BV2F7
Analysis Projects Propionimicrobium sp. BV2F7
Number of Analysis Projects (AP)
1  
Number of Derived Analyis Projects (DAP)
0  
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality (MIGS-31)
Finishing Goal Level 2: High-Quality Draft
Sequencing Comments
  
Sequencing Technology (MIGS-29) 454
Library Method (MIGS-28)
  
Number Of Reads
  
Read Size
  
Vector
  
GC Percent
56  
Chromosome Count
  
Plasmid Count
  
ORGANISM NAME
GOLD Organism ID Go0012638
Organism Name
Propionimicrobium sp. BV2F7  
Other names (alias, synonyms, short names, common names)
  
Organism Domain
BACTERIAL  
Phylogeny
ACTINOBACTERIA  
Genus
Propionimicrobium  
Genus Synonyms
  
Species
Propionimicrobium sp. BV2F7  
Subspecies
  
Species Synonyms
  
Strain
BV2F7  
Strain Synonyms
  
Serovar/Cultivar
  
Culture Collection ID
  
Type Strain
Unknown  
Exemplar DOI
  
Exemplar Name
  
Taxon DOI
  
Biosafety Level
  
Organism Comments
  
Cultured
Yes  
Culture Type
Isolate  
Organism Type
Natural  
Uncultured Type
  
Commercial Strain
  
Commercial Strain Comments
  
ORGANISM TAXONOMY
NCBI Taxonomy ID 1111131
NCBI Superkingdom
Bacteria  
NCBI Kingdom
  
NCBI Phylum
Actinobacteria  
NCBI Class
Actinobacteria  
NCBI Order
Propionibacteriales  
NCBI Family
Propionibacteriaceae  
NCBI Genus
Propionimicrobium  
NCBI Species
Propionimicrobium sp. BV2F7  
ISOLATION CLASSIFICATION
Ecosystem
Host-associated  
Ecosystem Category
Human  
Ecosystem Type
Reproductive system  
Ecosystem Subtype
Vagina  
Specific Ecosystem
Unclassified  
ORGANISM EXTERNAL REFERENCES
Strain Info ID
Genbank 16S ID
GENERAL PROPERTIES
Oxygen Requirement
  
Cell Shape
  
Motility
  
Sporulation
  
Temperature Range
  
Salinity
  
pH
  
Cell Diameter
  
Cell Length
  
Color
  
Gram Staining
Gram+  
Biotic Relationships
  
Symbiotic Physical Interaction
  
Symbiotic Relationship
  
Symbiont Name
  
Symbiont Taxon ID
  
Cell Arrangements
  
Diseases
  
Known Habitats Host
Metabolisms
  
Phenotypes
  
Energy Sources
  
HMP METADATA
HMP ID
1255  
Show in DACC?
Yes  
HMP Project Status
Awaiting DNA  
BEI Status
  
NCBI Submission Status
2. project has NCBI project id  
Isolate Suggestion Source
  
HMP Isolation Body Sample Site
Urogenital tract  
HMP Isolation Body Sample Subsite
  
HMP Finishing Goal
  
Source, Sample & Medical Relevance Comments
  
Isolate Availability Comments
  
Project Comments
  
DNA Received
No  
Date DNA Received
  
Date Sequencing Begins
  
Date Draft Sequencing Completed
  
Cross Reference ID
  

 

 

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