PROJECT NAME
GOLD Project ID
Gp0011312  
Project Name
Escherichia coli HM605  
Other Names
  
Legacy ER Project ID
19635  
Legacy GOLD ID
Gi09653  
NCBI BioProject Name Escherichia coli HM605
NCBI BioProject ID 66487
NCBI BioProject Accession PRJEA66487
NCBI Locus Tag
ECHM  
NCBI BioSample Accession SAMEA2272492
PI Henderson IR
Added By Ionna Pagani on 2011-06-21
Last Modified By JGI automated process on 2014-08-18
Project Comments
  
PROJECT TYPE
Specimen Organism
Nucleic Acid DNA
Sequencing Strategy
Whole Genome Sequencing  
PROJECT INFORMATION
Project Status
Permanent Draft  
Project Relevance Animal Pathogen
Medical
Sequencing Center University of Birmingham (USA)
Collaborating Institute
  
Funding Agency
  
Project Description
E.coli strain HM605 is a strain of the pathovar adherent-invasive Escherichia coli (AIEC), which is associated with Crohn's disease. The genome sequence of HM605 will facilitate the study and understanding of the molecular basis for AIEC interaction with the gut mucosa during Crohn's disease.  
Project Information Visibility Public
EXTERNAL PROJECT LINKS
Project Information
  
Database
  
Genome Publications Journal of bacteriology 193(17):4540 Complete genome sequence of the Crohn's disease-associated adherent-invasive Escherichia coli strain HM605.
Other Publications
  
PROJECT COMPOSITION
Study Escherichia coli HM605
Analysis Projects Escherichia coli HM605
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality (MIGS-31) Level 2: High-Quality Draft
Finishing Goal
  
Sequencing Comments
  
Sequencing Technology (MIGS-29) 454-GS-FLX
Library Method (MIGS-28)
  
Number Of Reads
  
Read Size
  
Vector
  
GC Percent
51  
Chromosome Count
  
Plasmid Count
  
ORGANISM NAME
GOLD Organism ID Go0007496
Organism Name
Escherichia coli HM605  
Other names (alias, synonyms, short names, common names)
  
Organism Domain
BACTERIAL  
Phylogeny
PROTEOBACTERIA-GAMMA  
Genus
Escherichia  
Genus Synonyms
  
Species
Escherichia coli  
Subspecies
  
Species Synonyms
  
Strain
HM605  
Strain Synonyms
  
Serovar-Biovar
  
Culture Collection ID
  
Type Strain
No  
Exemplar DOI
  
Exemplar Name
  
Taxon DOI
  
Biosafety Level
  
Organism Comments
  
Cultured
Yes  
Culture Type
Isolate  
Organism Type
Natural  
Uncultured Type
  
Commercial Strain
  
Commercial Strain Comments
  
ORGANISM TAXONOMY
NCBI Taxonomy ID 752789
NCBI Superkingdom
Bacteria  
NCBI Kingdom
  
NCBI Phylum
Proteobacteria  
NCBI Class
Gammaproteobacteria  
NCBI Order
Enterobacterales  
NCBI Family
Enterobacteriaceae  
NCBI Genus
Escherichia  
NCBI Species
Escherichia coli  
ISOLATION CLASSIFICATION
Ecosystem
Host-associated  
Ecosystem Category
Human  
Ecosystem Type
Unclassified  
Ecosystem Subtype
Unclassified  
Specific Ecosystem
Unclassified  
ORGANISM EXTERNAL REFERENCES
Strain Info ID
Genbank 16S ID
Synonym List
  
GENERAL PROPERTIES
Oxygen Requirement
Facultative  
Cell Shape
Rod-shaped  
Motility
Motile  
Sporulation
Nonsporulating  
Temperature Range
Mesophile  
Temperature Optimum
  
Salinity
  
pH
  
Cell Diameter
  
Cell Length
  
Color
  
Gram Staining
Gram-  
Biotic Relationships Free living
Symbiotic Physical Interaction
  
Symbiotic Relationship
  
Symbiont Name
  
Symbiont Taxon ID
  
Cell Arrangements Singles
Pairs
Diseases Diarrhea
Known Habitats Human intestinal microflora
Host
Metabolisms
  
Phenotypes Pathogen
Energy Sources Heterotroph

 

 

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