PROJECT NAME
GOLD Project ID
Gp0011222  
Project Name
Oligotropha carboxidovorans OM5  
Other Names
  
Legacy ER Project ID
19597  
Legacy GOLD ID
Gc01820  
NCBI BioProject Name Oligotropha carboxidovorans OM5
NCBI BioProject ID 41025
NCBI BioProject Accession
PRJNA41025  
NCBI Locus Tag
OCA5  
NCBI BioSample Accession
  
PI Gottschalk G
Added By Nikos Kyrpides on 2011-06-18 00:00:00.0
Last Modified By Auto script update processes on 2014-05-20 00:00:00.0
Project Comments
  
PROJECT TYPE
Specimen Organism
Nucleic Acid DNA
Sequencing Strategy
Whole Genome Sequencing  
PROJECT INFORMATION
Project Status
Complete and Published  
Project Relevance Biotechnological
Sequencing Center
  
Collaborating Institute University of Gottingen (Germany)
Funding Agency
  
Project Description
Oligotropha carboxidovorans is able to use carbon monoxide as an energy source.  
Project Information Visibility
Public  
EXTERNAL PROJECT LINKS
Project Information
  
Database
  
Genome Publications Journal of bacteriology 193(18):5043 Complete genome sequences of the chemolithoautotrophic Oligotropha carboxidovorans strains OM4 and OM5.
Other Publications
  
Isolation Publications
  
NCBI SRA ID
  
PROJECT COMPOSITION
Studies Oligotropha carboxidovorans OM5, DSM 1227
Analysis Projects Oligotropha carboxidovorans OM5
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality (MIGS-31) Level 6: Finished
Finishing Goal
  
Sequencing Comments
  
Sequencing Technology (MIGS-29) 454-GS-FLX
Library Method (MIGS-28)
  
Number Of Reads
  
Read Size
  
Vector
  
GC Percent
62  
Chromosome Count
1  
Plasmid Count
2  
ORGANISM NAME
GOLD Organism ID Go0003354
Organism Name
Oligotropha carboxidovorans OM5  
Other names (alias, synonyms, short names, common names)
  
Organism Domain
BACTERIAL  
Phylogeny
PROTEOBACTERIA-ALPHA  
Genus
Oligotropha  
Genus Synonyms
  
Species
Oligotropha carboxidovorans  
Subspecies
  
Species Synonyms
  
Strain
OM5  
Strain Synonyms
  
Serovar-Biovar
  
Culture Collection ID
DSM 1227  
Type Strain
Unknown  
Exemplar DOI
10.1601/ex.1490  
Exemplar Name
Oligotropha carboxidovorans  
Taxon DOI
10.1601/tx.1490  
Biosafety Level
1  
Organism Comments
  
Cultured
Yes  
Culture Type
Isolate  
Organism Type
Natural  
Uncultured Type
  
Commercial Strain
  
Commercial Strain Comments
  
ORGANISM TAXONOMY
NCBI Taxonomy ID 504832
NCBI Kingdom
  
NCBI Phylum
Proteobacteria  
NCBI Class
Alphaproteobacteria  
NCBI Order
Rhizobiales  
NCBI Family
Bradyrhizobiaceae  
NCBI Genus
Oligotropha  
NCBI Species
Oligotropha carboxidovorans  
ISOLATION CLASSIFICATION
Ecosystem
Engineered  
Ecosystem Category
Wastewater  
Ecosystem Type
Unclassified  
Ecosystem Subtype
Unclassified  
Specific Ecosystem
Unclassified  
ORGANISM EXTERNAL REFERENCES
Strain Info ID 114260
Genbank 16S ID
Synonym List
GENERAL PROPERTIES
Oxygen Requirement
  
Cell Shape
Rod-shaped  
Motility
  
Sporulation
  
Temperature Range
Mesophile  
Temperature Optimum
  
Salinity
  
pH
  
Cell Diameter
  
Cell Length
  
Color
  
Gram Staining
Gram-  
Biotic Relationships
ID 3
Term Free living
Symbiotic Physical Interaction
  
Symbiotic Relationship
  
Symbiont Name
  
Symbiont Taxon ID
  
Cell Arrangements
  
Diseases None
Known Habitats Aquatic
Metabolisms
  
Phenotypes
  
Energy Sources Chemolithoautotroph

 

 

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