PROJECT INFORMATION
GOLD Project ID
Gp0011222  
Project Name
Afipia carboxidovorans OM5  
Other Names
  
Legacy ER Project ID
19597  
Legacy GOLD ID
Gc01820  
NCBI BioProject Name Afipia carboxidovorans OM5
NCBI BioProject Accession PRJNA41025
NCBI Locus Tag
OCA5  
NCBI BioSample Accession
PI Gottschalk G
Added By Nikos Kyrpides on 2011-06-18
Last Modified By Mahathi Kandimalla on 2021-07-27
Project Comments
  
Project Status
Complete and Published  
Project Relevance Biotechnological
Sequencing Center University of Gottingen (Germany)
Collaborating Institute
  
Funding Agency
  
Project Description
Afipia carboxidovorans is able to use carbon monoxide as an energy source.  
Is JGI Project
No  
Project Information Visibility Public
PROJECT TYPE
Specimen Organism
Nucleic Acid DNA
Sequencing Strategy
Whole Genome Sequencing  
EXTERNAL PROJECT LINKS
JGI Data Utilization Status
  
JGI Award DOI
Genome Publications Journal of bacteriology 193(18):5043 Complete genome sequences of the chemolithoautotrophic Oligotropha carboxidovorans strains OM4 and OM5.

Other Publications
  
Ignored Publications
  
Unassigned Publications Gene Complete nucleotide sequence of the circular megaplasmid pHCG3 of Oligotropha carboxidovorans: function in the chemolithoautotrophic utilization of CO, H(2) and CO(2).

Journal of bacteriology 177(8):2197-203 Molecular characterization of the gene cluster coxMSL encoding the molybdenum-containing carbon monoxide dehydrogenase of Oligotropha carboxidovorans.

Show more publications...

SRA Experiment
  
PROJECT COMPOSITION
Study Afipia carboxidovorans OM5, DSM 1227
Organism Afipia carboxidovorans OM5
Analysis Projects Afipia carboxidovorans OM5
Number of Analysis Projects (AP) 1
Number of Derived Analyis Projects (DAP)
0  
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality (MIGS-31) Level 6: Finished
Finishing Goal
Contamination Screening Input
  
DNA Amplification Method
  
Single Cell Lysis Protocol
  
Single Cell Lysis Approach
  
Sequencing Comments
  
DNA Amplification Kit
  
Sequencing Technology (MIGS-29) 454 GS FLX
Library Method (MIGS-28)
  
Library Layout
  
Library Screening Method
  
Number Of Reads
  
Read Size
  
Vector
  
GC Percent
62  
Chromosome Count
1  
Plasmid Count
2  
ORGANISM NAME
GOLD Organism ID Go0003354
Organism Name
Afipia carboxidovorans OM5  
Other names (alias, synonyms, short names, common names)
  
Organism Domain
BACTERIAL  
Phylogeny
PROTEOBACTERIA-ALPHA  
Genus
Afipia  
Genus Synonyms
  
Species
Afipia carboxidovorans  
Subspecies
  
Species Synonyms
  
Strain
OM5  
Strain Synonyms
  
Serovar/Cultivar
  
Culture Collection ID
DSM 1227  
Type Strain
Yes  
Exemplar DOI
10.1601/ex.1490  
Exemplar Name
Oligotropha carboxidovorans  
Taxon DOI
10.1601/tx.1490  
Biosafety Level
1  
Organism Comments
  
Cultured
Yes  
Culture Type
Isolate  
Organism Type
Natural  
Uncultured Type
  
Commercial Strain
  
Commercial Strain Comments
  
ORGANISM TAXONOMY
NCBI Taxonomy ID 504832
NCBI Superkingdom
Bacteria  
NCBI Kingdom
  
NCBI Phylum
Proteobacteria  
NCBI Class
Alphaproteobacteria  
NCBI Order
Hyphomicrobiales  
NCBI Family
Bradyrhizobiaceae  
NCBI Genus
Afipia  
NCBI Species
Afipia carboxidovorans  
ISOLATION CLASSIFICATION
Ecosystem
Engineered  
Ecosystem Category
Wastewater  
Ecosystem Type
Unclassified  
Ecosystem Subtype
Unclassified  
Specific Ecosystem
Unclassified  
ORGANISM EXTERNAL REFERENCES
Strain Info ID 114260
Genbank 16S ID
GENERAL PROPERTIES
Oxygen Requirement
  
Cell Shape
Rod-shaped  
Motility
  
Sporulation
  
Temperature Range
Mesophile  
Salinity
  
pH
  
Cell Diameter
  
Cell Length
  
Color
  
Gram Staining
Gram-  
Biotic Relationships Free living
Symbiotic Physical Interaction
  
Symbiotic Relationship
  
Symbiont Name
  
Symbiont Taxon ID
  
Cell Arrangements
  
Diseases None
Known Habitats Aquatic
Metabolisms
  
Phenotypes
  
Energy Sources Chemolithoautotroph

 

 

  You are going to add the following user to your project, biosample and study.

 

Contact Name/Email:

Do you want to continue?

 

 

  You are going to remove permissions for the following user to your project, biosample and study.

 

Contact Name/Email:

Do you want to continue?

 

 

  Changing the SP visibility will also change visibility on the following items:

 

Do you want to continue with this visibility change?

 

 

  Checking that this Sequencing Project can be made private:

 

Do you want to continue with this visibility change?

 

 

 

 

 

  Changing the SP Sequencing Strategy will also effect these items:

 

Do you want to continue with this Sequencing Strategy change?