PROJECT INFORMATION
GOLD Project ID
Gp0011183  
Project Name
Novosphingobium sp. PP1Y  
Other Names
  
Legacy ER Project ID
19583  
Legacy GOLD ID
Gc01799  
NCBI BioProject Name Novosphingobium sp. PP1Y
NCBI BioProject ID 66901
NCBI BioProject Accession PRJEA66901
NCBI Locus Tag
PP1Y  
NCBI BioSample Accession SAMEA2272572
PI
Added By Nikos Kyrpides on 2011-06-04
Last Modified By Alejandro Rodriguez Mojica on 2018-07-20
Project Comments
  
Project Status
Complete and Published  
Project Relevance Biotechnological
Bioreactors
Sequencing Center Ceinge Biotecnologie Avanzate S. C. a R. L. (Italy)
Collaborating Institute
  
Funding Agency
  
Project Description
Novosphingobium sp. PP1Y genome sequencing  
Project Information Visibility Public
PROJECT TYPE
Specimen Organism
Nucleic Acid DNA
Sequencing Strategy
Whole Genome Sequencing  
EXTERNAL PROJECT LINKS
Project Information
  
Database
  
Genome Publications Journal of bacteriology 193(16):4296 De novo sequencing and assembly of the whole genome of Novosphingobium sp. strain PP1Y.
Other Publications
  
PROJECT COMPOSITION
Study Novosphingobium sp. PP1Y
Analysis Projects Novosphingobium sp. PP1Y
Number of Analysis Projects 1
Number of DAPs
0  
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality (MIGS-31) Level 6: Finished
Finishing Goal
  
Sequencing Comments
  
Sequencing Technology (MIGS-29)
  
Library Method (MIGS-28)
  
Number Of Reads
  
Read Size
  
Vector
  
GC Percent
63  
Chromosome Count
1  
Plasmid Count
3  
ORGANISM NAME
GOLD Organism ID Go0011183
Organism Name
Novosphingobium sp. PP1Y  
Other names (alias, synonyms, short names, common names)
  
Organism Domain
BACTERIAL  
Phylogeny
PROTEOBACTERIA-ALPHA  
Genus
Novosphingobium  
Genus Synonyms
  
Species
Novosphingobium sp. PP1Y  
Subspecies
  
Species Synonyms
  
Strain
PP1Y  
Strain Synonyms
  
Serovar-Biovar
  
Culture Collection ID
  
Type Strain
Unknown  
Exemplar DOI
  
Exemplar Name
  
Taxon DOI
  
Biosafety Level
  
Organism Comments
  
Cultured
Yes  
Culture Type
Isolate  
Organism Type
Natural  
Uncultured Type
  
Commercial Strain
  
Commercial Strain Comments
  
ORGANISM TAXONOMY
NCBI Taxonomy ID 702113
NCBI Superkingdom
Bacteria  
NCBI Kingdom
  
NCBI Phylum
Proteobacteria  
NCBI Class
Alphaproteobacteria  
NCBI Order
Sphingomonadales  
NCBI Family
Sphingomonadaceae  
NCBI Genus
Novosphingobium  
NCBI Species
Novosphingobium sp. PP1Y  
ISOLATION CLASSIFICATION
Ecosystem
  
Ecosystem Category
  
Ecosystem Type
  
Ecosystem Subtype
  
Specific Ecosystem
  
ORGANISM EXTERNAL REFERENCES
Strain Info ID
Genbank 16S ID
Synonym List
  
GENERAL PROPERTIES
Oxygen Requirement
Obligate aerobe  
Cell Shape
Rod-shaped  
Motility
Motile  
Sporulation
  
Temperature Range
Mesophile  
Temperature Optimum
  
Salinity
  
pH
  
Cell Diameter
  
Cell Length
  
Color
  
Gram Staining
Gram-  
Biotic Relationships Free living
Symbiotic Physical Interaction
  
Symbiotic Relationship
  
Symbiont Name
  
Symbiont Taxon ID
  
Cell Arrangements
  
Diseases
  
Known Habitats Soil
Host
Fresh water
Metabolisms Nitrogen fixation
Phenotypes
  
Energy Sources
  

 

 

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