Studies
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56,336 |
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Biosamples
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196,965 |
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Sequencing Projects
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525,338 |
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Analysis Projects
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385,100 |
| Organisms | 484,224 |
| PROJECT INFORMATION | |
|---|---|
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GOLD Project ID
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Gp0011088
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Project Name
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Citricoccus sp. CH26A
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Other Names
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Legacy ER Project ID
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2611
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Legacy GOLD ID
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Gi09773
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| NCBI BioProject Name | Citricoccus sp. CH26A |
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NCBI BioProject Accession
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PRJNA67965 |
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NCBI Locus Tag
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CITRI
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NCBI BioSample Accession
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SAMN02469456 |
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Source Sample ID
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| PI | Herrera-Estrella L |
| Added By | Jakob Jansson on 2011-06-24 |
| Last Modified By | JGI automated process on 2014-08-18 |
| Project Comments |
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Project Status
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Permanent Draft
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Project Relevance
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Sequencing Center
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Cinvestav, Guanajuato
(Mexico)
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Collaborating Institute
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Funding Agency
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Project Description
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The Citricoccus sp. genome is the first of its genus which has been isolated from an oligotrophic environment. This genome might contribute in the study of the bacterial lifestyle in challenging conditions. Isolated from Cuatro Ci¿negas Basin (CCB) in Coahuila, Mexico. The CCB is a system of subterranean water streams and ponds characterized by high endemism and biodiversity of macro- and microorganisms and an extremely oligotrophic aquatic environment, poor in NaCl and carbonates and rich in magnesium, calcium, and sulfates.
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| Is JGI Project |
No
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Project Information Visibility
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Public |
| PROJECT TYPE | |
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Specimen
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Organism |
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Nucleic Acid
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DNA |
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Sequencing Strategy
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Whole Genome Sequencing
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| EXTERNAL PROJECT LINKS | |
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JGI Data Utilization Status
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JGI Award DOI
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Genome Publications
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Journal of bacteriology: 193(21):6092-3 First draft genome sequence of a strain from the genus Citricoccus. PubMed: 21994924 DOI: 10.1128/JB.06045-11 |
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Other Publications
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Ignored Publications
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Unassigned Publications
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| SRA Experiment |
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| PROJECT COMPOSITION | |
| Study |
Citricoccus sp. CH26A |
| Organism |
Citricoccus sp. CH26A |
| Analysis Projects |
Citricoccus sp. CH26A |
| Number of Analysis Projects (AP) |
1 |
| Number of Derived Analyis Projects (DAP) |
0
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| SEQUENCING INFORMATION | |
|---|---|
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Sequencing Status
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Complete |
| Sequencing Quality (MIGS-31) |
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Finishing Goal
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Contamination Screening Input
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DNA Amplification Method
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Single Cell Lysis Protocol
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Single Cell Lysis Approach
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Sequencing Comments
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DNA Amplification Kit
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Sequencing Technology
(MIGS-29)
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454 GS FLX |
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Library Method
(MIGS-28)
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Library Layout
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Library Screening Method
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Number Of Reads
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Read Size
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Vector
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| GC Percent |
71
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| Chromosome Count |
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| Plasmid Count |
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| ORGANISM NAME | |
|---|---|
| GOLD Organism ID |
Go0011088 |
| Organism Name |
Citricoccus sp. CH26A
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| Other names (alias, synonyms, short names, common names) |
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| Organism Domain |
BACTERIAL
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| Phylogeny |
ACTINOMYCETOTA
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| Genus |
Citricoccus
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| Genus Synonyms |
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| Species |
Citricoccus sp. CH26A
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| Subspecies |
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| Species Synonyms |
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| Strain |
CH26A
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| Strain Synonyms |
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| Serovar/Cultivar |
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| Culture Collection ID |
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| Type Strain |
Unknown
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| Exemplar DOI |
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| Exemplar Name |
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| Taxon DOI |
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| Biosafety Level |
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| Organism Comments |
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| Cultured |
Yes
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| Culture Type |
Isolate
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| Organism Type |
Natural
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| Uncultured Type |
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| Commercial Strain |
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| Commercial Strain Comments |
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ORGANISM TAXONOMY
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| NCBI Taxonomy ID |
1045009 |
| NCBI Superkingdom |
Bacteria
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| NCBI Kingdom |
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| NCBI Phylum |
Actinomycetota
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| NCBI Class |
Actinomycetes
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| NCBI Order |
Micrococcales
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| NCBI Family |
Micrococcaceae
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| NCBI Genus |
Citricoccus
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| NCBI Species |
Citricoccus sp. CH26A
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| ISOLATION CLASSIFICATION | |
| Ecosystem |
Environmental
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| Ecosystem Category |
Aquatic
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| Ecosystem Type |
Freshwater
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| Ecosystem Subtype |
Groundwater
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| Specific Ecosystem |
Unclassified
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| ORGANISM EXTERNAL REFERENCES | |
| Strain Info ID |
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| Genbank 16S ID |
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| GENERAL PROPERTIES | |
|---|---|
| Oxygen Requirement |
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| Cell Shape |
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| Motility |
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| Sporulation |
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| Temperature Range |
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| Salinity |
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| pH |
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| Cell Diameter |
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| Cell Length |
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| Color |
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| Gram Staining |
Gram+
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| Biotic Relationships |
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| Symbiotic Physical Interaction |
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| Symbiotic Relationship |
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| Symbiont Name |
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| Symbiont Taxon ID |
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| Cell Arrangements |
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| Diseases |
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| Known Habitats |
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| Metabolisms |
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| Phenotypes |
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| Energy Sources |
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