PROJECT INFORMATION
GOLD Project ID
Gp0011085  
Project Name
Pseudoxanthomonas spadix BD-a59  
Other Names
  
Legacy ER Project ID
2607  
Legacy GOLD ID
Gi09769, Gc02019  
NCBI BioProject Name Pseudoxanthomonas spadix BD-a59
NCBI BioProject ID 67981
NCBI BioProject Accession PRJNA67981
NCBI Locus Tag
DSC  
NCBI BioSample Accession
PI Che Ok Jeon
Added By Jakob Jansson on 2011-06-24
Last Modified By Jon Bertsch on 2014-04-08
Project Comments
  
Project Status
Complete and Published  
Project Relevance
  
Sequencing Center Chung-Ang University (South Korea)
Collaborating Institute
  
Funding Agency
  
Project Description
metabolize all six BTEX (benzene, toluene, ethylbenzene, and o-, m-, and p-xylene) compounds  
Project Information Visibility Public
PROJECT TYPE
Specimen Organism
Nucleic Acid DNA
Sequencing Strategy
Whole Genome Sequencing  
EXTERNAL PROJECT LINKS
Project Information
  
Database
  
Genome Publications Journal of bacteriology 194(2):544 Complete genome sequence of the BTEX-degrading bacterium Pseudoxanthomonas spadix BD-a59.
Other Publications
  
PROJECT COMPOSITION
Study Pseudoxanthomonas spadix BD-a59
Analysis Projects Pseudoxanthomonas spadix BD-a59
Number of Analysis Projects 1
Number of DAPs
0  
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality (MIGS-31) Level 6: Finished
Finishing Goal
  
Sequencing Comments
  
Sequencing Technology (MIGS-29)
  
Library Method (MIGS-28)
  
Number Of Reads
  
Read Size
  
Vector
  
GC Percent
68  
Chromosome Count
1  
Plasmid Count
0  
ORGANISM NAME
GOLD Organism ID Go0011085
Organism Name
Pseudoxanthomonas spadix BD-a59  
Other names (alias, synonyms, short names, common names)
  
Organism Domain
BACTERIAL  
Phylogeny
PROTEOBACTERIA-GAMMA  
Genus
Pseudoxanthomonas  
Genus Synonyms
  
Species
Pseudoxanthomonas spadix  
Subspecies
  
Species Synonyms
  
Strain
BD-a59  
Strain Synonyms
  
Serovar-Biovar
  
Culture Collection ID
DSM 19372  
Type Strain
Unknown  
Exemplar DOI
  
Exemplar Name
  
Taxon DOI
  
Biosafety Level
  
Organism Comments
  
Cultured
Yes  
Culture Type
Isolate  
Organism Type
Natural  
Uncultured Type
  
Commercial Strain
  
Commercial Strain Comments
  
ORGANISM TAXONOMY
NCBI Taxonomy ID 1045855
NCBI Superkingdom
Bacteria  
NCBI Kingdom
  
NCBI Phylum
Proteobacteria  
NCBI Class
Gammaproteobacteria  
NCBI Order
Xanthomonadales  
NCBI Family
Xanthomonadaceae  
NCBI Genus
Pseudoxanthomonas  
NCBI Species
Pseudoxanthomonas spadix  
ISOLATION CLASSIFICATION
Ecosystem
Environmental  
Ecosystem Category
Terrestrial  
Ecosystem Type
Soil  
Ecosystem Subtype
Unclassified  
Specific Ecosystem
Contaminated  
ORGANISM EXTERNAL REFERENCES
Strain Info ID
Genbank 16S ID
Synonym List
  
GENERAL PROPERTIES
Oxygen Requirement
  
Cell Shape
  
Motility
  
Sporulation
  
Temperature Range
  
Temperature Optimum
  
Salinity
  
pH
  
Cell Diameter
  
Cell Length
  
Color
  
Gram Staining
Gram-  
Biotic Relationships
  
Symbiotic Physical Interaction
  
Symbiotic Relationship
  
Symbiont Name
  
Symbiont Taxon ID
  
Cell Arrangements
  
Diseases
  
Known Habitats Soil
Metabolisms
  
Phenotypes
  
Energy Sources
  

 

 

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