PROJECT INFORMATION
GOLD Project ID
Gp0010952  
Project Name
Sphingomonas wittichii TTNP3  
Other Names
  
Legacy ER Project ID
19528  
Legacy GOLD ID
Gi09532  
NCBI BioProject Name Sphingomonas wittichii TTNP3
NCBI BioProject Accession PRJNA64469
NCBI Locus Tag
TTNP3  
NCBI BioSample Accession
Source Sample ID
PI Unknown
Added By Ionna Pagani on 2011-04-13
Last Modified By Ionna Pagani on 2011-04-13
Project Comments
  
Project Status
incomplete  
Project Relevance Dioxin-mineralizing
Environmental
Bioremediation
Sequencing Center Institute of Molecular Genetics of the ASCR, v. v. i. (Czech Republic)
Collaborating Institute
  
Funding Agency
  
Project Description
Sphingomonas wittichii was isolated from water from the Elbe River in Germany. This organism is able to grow using dibenzo-p-dioxin or dibenzofuran as a sole carbon source. These compounds are widespread environmental contaminants formed as by-products in the manufacture of pesticides and paper, and during the incineration of industrial waste. The enzymes involved in degradation of these substrates is contained, in part, on plasmids in Sphingomonas wittichii. Sphingomonas sp. strain TTNP3, which has been isolated from activated sewage sludge is able to degrade both Nonylphenol and Bisphenol A by a type II ipso-substitution mechanism.  
Is JGI Project
No  
Project Information Visibility Public
PROJECT TYPE
Specimen Organism
Nucleic Acid DNA
Sequencing Strategy
Whole Genome Sequencing  
EXTERNAL PROJECT LINKS
JGI Data Utilization Status
  
JGI Award DOI
Genome Publications
  
Other Publications
  
Ignored Publications
  
Unassigned Publications
  
SRA Experiment
  
PROJECT COMPOSITION
Study Sphingomonas wittichii TTNP3
Organism Sphingomonas wittichii TTNP3
Analysis Projects
  
Number of Analysis Projects (AP) 0
Number of Derived Analyis Projects (DAP)
0  
SEQUENCING INFORMATION
Sequencing Status In progress
Sequencing Quality (MIGS-31)
Finishing Goal
Contamination Screening Input
  
DNA Amplification Method
  
Single Cell Lysis Protocol
  
Single Cell Lysis Approach
  
Sequencing Comments
  
DNA Amplification Kit
  
Sequencing Technology (MIGS-29) 454
Library Method (MIGS-28)
  
Library Layout
  
Library Screening Method
  
Number Of Reads
  
Read Size
  
Vector
  
GC Percent
  
Chromosome Count
  
Plasmid Count
  
ORGANISM NAME
GOLD Organism ID Go0010952
Organism Name
Sphingomonas wittichii TTNP3  
Other names (alias, synonyms, short names, common names)
  
Organism Domain
BACTERIAL  
Phylogeny
PROTEOBACTERIA-ALPHA  
Genus
Sphingomonas  
Genus Synonyms
  
Species
Sphingomonas wittichii  
Subspecies
  
Species Synonyms
  
Strain
TTNP3  
Strain Synonyms
  
Serovar/Cultivar
  
Culture Collection ID
  
Type Strain
Unknown  
Exemplar DOI
  
Exemplar Name
  
Taxon DOI
  
Biosafety Level
  
Organism Comments
  
Cultured
Yes  
Culture Type
Isolate  
Organism Type
Natural  
Uncultured Type
  
Commercial Strain
  
Commercial Strain Comments
  
ORGANISM TAXONOMY
NCBI Taxonomy ID 999381
NCBI Superkingdom
Bacteria  
NCBI Kingdom
  
NCBI Phylum
Pseudomonadota  
NCBI Class
Alphaproteobacteria  
NCBI Order
Sphingomonadales  
NCBI Family
Sphingomonadaceae  
NCBI Genus
Rhizorhabdus  
NCBI Species
Rhizorhabdus wittichii  
ISOLATION CLASSIFICATION
Ecosystem
Engineered  
Ecosystem Category
Wastewater  
Ecosystem Type
Activated Sludge  
Ecosystem Subtype
Unclassified  
Specific Ecosystem
Unclassified  
ORGANISM EXTERNAL REFERENCES
Strain Info ID
Genbank 16S ID
GENERAL PROPERTIES
Oxygen Requirement
Aerobe  
Cell Shape
Rod-shaped  
Motility
Motile  
Sporulation
Nonsporulating  
Temperature Range
Mesophile  
Salinity
  
pH
  
Cell Diameter
  
Cell Length
  
Color
  
Gram Staining
Gram-  
Biotic Relationships Free living
Symbiotic Physical Interaction
  
Symbiotic Relationship
  
Symbiont Name
  
Symbiont Taxon ID
  
Cell Arrangements
  
Diseases None
Known Habitats Fresh water
Sludge
Wastewater
Metabolisms
  
Phenotypes
  
Energy Sources Heterotroph

 

 

  You are going to add the following user to your project, biosample and study.

 

Contact Name/Email:

Do you want to continue?

 

 

  You are going to remove permissions for the following user to your project, biosample and study.

 

Contact Name/Email:

Do you want to continue?

 

 

  Changing the SP visibility will also change visibility on the following items:

 

Do you want to continue with this visibility change?

 

 

  Checking that this Sequencing Project can be made private:

 

Do you want to continue with this visibility change?

 

 

 

 

 

  Changing the SP Sequencing Strategy will also effect these items:

 

Do you want to continue with this Sequencing Strategy change?