PROJECT NAME
GOLD Project ID
Gp0010565  
Project Name
Pseudomonas aeruginosa AES-1R  
Other Names
  
Legacy ER Project ID
19185  
Legacy GOLD ID
Gi09179  
NCBI BioProject Name Pseudomonas aeruginosa AES-1R
NCBI BioProject ID 64619
NCBI BioProject Accession
PRJNA64619  
NCBI Locus Tag
AES1R  
NCBI BioSample Accession
SAMN02471202  
PI
Added By Ioanna Pagani on 2011-03-24
Last Modified By Auto script update processes on 2014-03-26
Project Comments
  
PROJECT TYPE
Specimen Organism
Nucleic Acid DNA
Sequencing Strategy
Whole Genome Sequencing  
PROJECT INFORMATION
Project Status
Complete and Published  
Project Relevance Bioremediation
Environmental
Human Pathogen
Opportunistic Pathogen
Sequencing Center University of Sydney (Australia)
Collaborating Institute J. Craig Venter Institute (JCVI) (USA)
Funding Agency
  
Project Description
P. aeruginosa strains have adapted to growth in the cystic fibrosis lung through gene deletions, acquisitions and mutations that set these strains apart genomically from environmental strains. Furthermore, while most CF strains are genotypically different from person to person, some clones are found in a large proportion of CF patients, indicating they are probably transmissible and are often more virulent. Such clones include the Australian Epidemic Strain-1 (AES-1) which infects 10-40% of patients attending CF clinics in eastern Australia. AES-1R is an acute infection isolate of AES-1 and as such its genome represents the initial infective phase of AES-1 which will likely yield vital information on the genetic characteristics of this epidemic strain.   
Project Information Visibility
Public  
EXTERNAL PROJECT LINKS
Project Information Wikipedia
Database
  
Genome Publications PloS one 6(9):e24526 Pseudomonas aeruginosa AES-1 exhibits increased virulence gene expression during chronic infection of cystic fibrosis lung.
Other Publications
  
Isolation Publications
  
PROJECT COMPOSITION
Studies Pseudomonas aeruginosa AES-1R
Analysis Projects Pseudomonas aeruginosa AES-1R
Pseudomonas aeruginosa AES-1R null replaces 19811
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality (MIGS-31) Level 6: Finished
Finishing Goal
  
Sequencing Comments
  
Sequencing Technology (MIGS-29) 454-GS20
Library Method (MIGS-28)
  
Number Of Reads
  
Read Size
  
Vector
  
GC Percent
67  
Chromosome Count
  
Plasmid Count
  
ORGANISM NAME
GOLD Organism ID Go0010565
Organism Name
Pseudomonas aeruginosa AES-1R  
Other names (alias, synonyms, short names, common names)
  
Organism Domain
BACTERIAL  
Phylogeny
PROTEOBACTERIA-GAMMA  
Genus
Pseudomonas  
Genus Synonyms
  
Species
Pseudomonas aeruginosa  
Subspecies
  
Species Synonyms
  
Strain
AES-1R  
Strain Synonyms
  
Serovar-Biovar
  
Culture Collection ID
  
Type Strain
Unknown  
Exemplar DOI
  
Exemplar Name
  
Taxon DOI
  
Biosafety Level
  
Organism Comments
  
Cultured
Yes  
Culture Type
Isolate  
Organism Type
Natural  
Uncultured Type
  
Commercial Strain
  
Commercial Strain Comments
  
ORGANISM TAXONOMY
NCBI Taxonomy ID 1000561
NCBI Kingdom
  
NCBI Phylum
Proteobacteria  
NCBI Class
Gammaproteobacteria  
NCBI Order
Pseudomonadales  
NCBI Family
Pseudomonadaceae  
NCBI Genus
Pseudomonas  
NCBI Species
Pseudomonas aeruginosa  
ISOLATION CLASSIFICATION
Ecosystem
Host-associated  
Ecosystem Category
Human  
Ecosystem Type
Respiratory system  
Ecosystem Subtype
Pulmonary system  
Specific Ecosystem
Sputum  
ORGANISM EXTERNAL REFERENCES
Strain Info ID
Genbank 16S ID
Synonym List
  
GENERAL PROPERTIES
Oxygen Requirement
Aerobe  
Cell Shape
Rod-shaped  
Motility
Motile  
Sporulation
Nonsporulating  
Temperature Range
Mesophile  
Temperature Optimum
  
Salinity
  
pH
  
Cell Diameter
  
Cell Length
  
Color
  
Gram Staining
Gram-  
Biotic Relationships
ID 3
Term Free living
Symbiotic Physical Interaction
  
Symbiotic Relationship
  
Symbiont Name
  
Symbiont Taxon ID
  
Cell Arrangements Singles
Diseases None
Known Habitats Host
Wastewater
Metabolisms
  
Phenotypes
  
Energy Sources
  

 

 

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