PROJECT NAME
GOLD Project ID
Gp0010478  
Project Name
Amycolicicoccus subflavus DQS3-9A1  
Other Names
  
Legacy ER Project ID
19166  
Legacy GOLD ID
Gi09159, Gc01773  
NCBI BioProject Name Amycolicicoccus subflavus DQS3-9A1
NCBI BioProject ID 63351
NCBI BioProject Accession
PRJNA63351  
NCBI Locus Tag
AS9A  
NCBI BioSample Accession
  
PI Guo-Ying Li
Added By Ioanna Pagani on 2011-03-09
Last Modified By Auto script update processes on 2014-05-20
Project Comments
  
PROJECT TYPE
Specimen Organism
Nucleic Acid DNA
Sequencing Strategy
Whole Genome Sequencing  
PROJECT INFORMATION
Project Status
Complete and Published  
Project Relevance Bioremediation
Environmental
Sequencing Center Peking University (China)
Collaborating Institute
  
Funding Agency
  
Project Description
Oil pollution has become a global issue because of its severe ecological impact and destruction. Bioremediation is proved to be an effective process to restore the oil polluted environments. Bacteria from oil contaminated environment always have the abilities for degradation of hydrocarbons and are thought to be useful in bioremediation of oil pollution. Amycolicicoccus subflavus DQS-9A1T, an actinomycete, is a type strain of newly published novel species in the novel genus Amycolicicoccus, isolated from the crude oil-polluted saline soil in China. The complete genome sequence of Amycolicicoccus subflavus DQS-9A1 will provide new strategies for bioremediation of oil contaminated environment.  
Project Information Visibility
Public  
EXTERNAL PROJECT LINKS
Project Information
  
Database
  
Genome Publications Journal of bacteriology 193(17):4538-9 Complete genome sequence of Amycolicicoccus subflavus DQS3-9A1T, an actinomycete isolated from crude oil-polluted soil.
Other Publications
  
Isolation Publications
  
PROJECT COMPOSITION
Studies Amycolicicoccus subflavus DQS3-9A1
Analysis Projects Amycolicicoccus subflavus DQS3-9A1
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality (MIGS-31) Level 6: Finished
Finishing Goal
  
Sequencing Comments
  
Sequencing Technology (MIGS-29)
  
Library Method (MIGS-28)
  
Number Of Reads
  
Read Size
  
Vector
  
GC Percent
62  
Chromosome Count
1  
Plasmid Count
2  
ORGANISM NAME
GOLD Organism ID Go0011106
Organism Name
Amycolicicoccus subflavus DQS3-9A1  
Other names (alias, synonyms, short names, common names)
  
Organism Domain
BACTERIAL  
Phylogeny
ACTINOBACTERIA  
Genus
Amycolicicoccus  
Genus Synonyms
  
Species
Amycolicicoccus subflavus  
Subspecies
  
Species Synonyms
  
Strain
DQS3-9A1  
Strain Synonyms
  
Serovar-Biovar
  
Culture Collection ID
DSM 45089  
Type Strain
Unknown  
Exemplar DOI
10.1601/ex.17799  
Exemplar Name
Amycolicicoccus subflavus  
Taxon DOI
10.1601/tx.17799  
Biosafety Level
1  
Organism Comments
  
Cultured
Yes  
Culture Type
Isolate  
Organism Type
Natural  
Uncultured Type
  
Commercial Strain
  
Commercial Strain Comments
  
ORGANISM TAXONOMY
NCBI Taxonomy ID 443218
NCBI Kingdom
  
NCBI Phylum
Actinobacteria  
NCBI Class
Actinobacteria  
NCBI Order
Corynebacteriales  
NCBI Family
Mycobacteriaceae  
NCBI Genus
Amycolicicoccus  
NCBI Species
Amycolicicoccus subflavus  
ISOLATION CLASSIFICATION
Ecosystem
Environmental  
Ecosystem Category
Terrestrial  
Ecosystem Type
Soil  
Ecosystem Subtype
Unclassified  
Specific Ecosystem
Oil-contaminated  
ORGANISM EXTERNAL REFERENCES
Strain Info ID
Genbank 16S ID
Synonym List
GENERAL PROPERTIES
Oxygen Requirement
  
Cell Shape
  
Motility
  
Sporulation
  
Temperature Range
Mesophile  
Temperature Optimum
  
Salinity
  
pH
  
Cell Diameter
  
Cell Length
  
Color
  
Gram Staining
Gram+  
Biotic Relationships
  
Symbiotic Physical Interaction
  
Symbiotic Relationship
  
Symbiont Name
  
Symbiont Taxon ID
  
Cell Arrangements
  
Diseases
  
Known Habitats Soil
Metabolisms
  
Phenotypes
  
Energy Sources
  

 

 

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