PROJECT NAME
GOLD Project ID
Gp0010476  
Project Name
Polymorphum gilvum SL003B-26A1  
Other Names
  
Legacy ER Project ID
2098  
Legacy GOLD ID
Gi09157, Gc01693  
NCBI BioProject Name Polymorphum gilvum SL003B-26A1
NCBI BioProject ID 63293
NCBI BioProject Accession
PRJNA63293  
NCBI Locus Tag
SL003B  
NCBI BioSample Accession
  
PI Xiao-Lei Wu
Added By Ioanna Pagani on 2011-03-09
Last Modified By Jon Bertsch on 2014-04-08
Project Comments
  
PROJECT TYPE
Specimen Organism
Nucleic Acid DNA
Sequencing Strategy
Whole Genome Sequencing  
PROJECT INFORMATION
Project Status
Complete and Published  
Project Relevance Bioremediation
Environmental
Sequencing Center Peking University (China)
Collaborating Institute
  
Funding Agency
  
Project Description
Polymorphum gilvum SL003B-26A1 is a type strain of a newly published novel species in the novel genus Polymorphum. It was isolated from a crude oil-polluted saline soil in Shengli Oilfield, China and could use the crude oil as the sole carbon source. Oil pollution has become a global issue because of its severe ecological impact and destruction. Bioremediation is proved to be an effective process to restore the oil polluted environments. The complete genome sequence of Polymorphum gilvum SL003B-26A1 provides new strategies for bioremediation of oil contaminated environment.  
Project Information Visibility
Public  
EXTERNAL PROJECT LINKS
Project Information Publication
Database
  
Genome Publications Journal of bacteriology 193(11):2894-5 Complete genome sequence of Polymorphum gilvum SL003B-26A1T, a crude oil-degrading bacterium from oil-polluted saline soil.
Other Publications
  
Isolation Publications
  
NCBI SRA ID
  
PROJECT COMPOSITION
Studies Polymorphum gilvum SL003B-26A1
Analysis Projects Polymorphum gilvum SL003B-26A1
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality (MIGS-31) Level 6: Finished
Finishing Goal
  
Sequencing Comments
  
Sequencing Technology (MIGS-29)
  
Library Method (MIGS-28)
  
Number Of Reads
  
Read Size
  
Vector
  
GC Percent
67  
Chromosome Count
1  
Plasmid Count
1  
ORGANISM NAME
GOLD Organism ID Go0010476
Organism Name
Polymorphum gilvum SL003B-26A1  
Other names (alias, synonyms, short names, common names)
  
Organism Domain
BACTERIAL  
Phylogeny
PROTEOBACTERIA-ALPHA  
Genus
Polymorphum  
Genus Synonyms
  
Species
Polymorphum gilvum  
Subspecies
  
Species Synonyms
  
Strain
SL003B-26A1  
Strain Synonyms
  
Serovar-Biovar
  
Culture Collection ID
CGMCC 1.9160  
Type Strain
Yes  
Exemplar DOI
10.1601/ex.23565  
Exemplar Name
Polymorphum gilvum SL003B-26A1  
Taxon DOI
10.1601/tx.23565  
Biosafety Level
1  
Organism Comments
  
Cultured
Yes  
Culture Type
Isolate  
Organism Type
Natural  
Uncultured Type
  
Commercial Strain
  
Commercial Strain Comments
  
ORGANISM TAXONOMY
NCBI Taxonomy ID 991905
NCBI Kingdom
  
NCBI Phylum
Proteobacteria  
NCBI Class
Alphaproteobacteria  
NCBI Order
  
NCBI Family
  
NCBI Genus
Polymorphum  
NCBI Species
Polymorphum gilvum  
ISOLATION CLASSIFICATION
Ecosystem
Environmental  
Ecosystem Category
Terrestrial  
Ecosystem Type
Soil  
Ecosystem Subtype
Unclassified  
Specific Ecosystem
Oil-contaminated  
ORGANISM EXTERNAL REFERENCES
Strain Info ID
Genbank 16S ID
Synonym List
  
GENERAL PROPERTIES
Oxygen Requirement
  
Cell Shape
  
Motility
  
Sporulation
  
Temperature Range
  
Temperature Optimum
  
Salinity
  
pH
  
Cell Diameter
  
Cell Length
  
Color
  
Gram Staining
Gram-  
Biotic Relationships
  
Symbiotic Physical Interaction
  
Symbiotic Relationship
  
Symbiont Name
  
Symbiont Taxon ID
  
Cell Arrangements
  
Diseases
  
Known Habitats Soil
Metabolisms
  
Phenotypes
  
Energy Sources
  

 

 

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