PROJECT NAME
GOLD Project ID
Gp0010353  
Project Name
Aggregatibacter aphrophilus 320, ATCC 33389  
Other Names
  
Legacy ER Project ID
19088  
Legacy GOLD ID
Gi08993  
NCBI BioProject Name Aggregatibacter aphrophilus ATCC 33389
NCBI BioProject ID 62995
NCBI BioProject Accession
PRJNA62995  
NCBI Locus Tag
ATCC33389  
NCBI BioSample Accession
SAMN02471993  
PI Casey Chen
Added By Ioanna Pagani on 2011-02-15
Last Modified By Auto script update processes on 2014-10-31
Project Comments
  
PROJECT TYPE
Specimen Organism
Nucleic Acid DNA
Sequencing Strategy
Whole Genome Sequencing  
PROJECT INFORMATION
Project Status
Permanent Draft  
Project Relevance Medical
Sequencing Center University of Southern California (USA)
Collaborating Institute
  
Funding Agency
  
Project Description
Intimately associated with man,part of the human oral flora. Occasionally recovered from human blood and brain,as causes of endocarditis and abscesses  
Project Information Visibility
Public  
EXTERNAL PROJECT LINKS
Project Information
  
Database
  
Genome Publications
  
Other Publications
  
Isolation Publications
  
PROJECT COMPOSITION
Studies Aggregatibacter genome sequencing, USC School of Dentistry, USA
Analysis Projects Aggregatibacter aphrophilus 320, ATCC 33389
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality (MIGS-31)
Finishing Goal
  
Sequencing Comments
  
Sequencing Technology (MIGS-29) 454
Library Method (MIGS-28)
  
Number Of Reads
  
Read Size
  
Vector
  
GC Percent
42  
Chromosome Count
  
Plasmid Count
  
ORGANISM NAME
GOLD Organism ID Go0005321
Organism Name
Aggregatibacter aphrophilus 320, ATCC 33389  
Other names (alias, synonyms, short names, common names)
  
Organism Domain
BACTERIAL  
Phylogeny
PROTEOBACTERIA-GAMMA  
Genus
Aggregatibacter  
Genus Synonyms
  
Species
Aggregatibacter aphrophilus  
Subspecies
  
Species Synonyms
  
Strain
320  
Strain Synonyms
  
Serovar-Biovar
  
Culture Collection ID
ATCC 33389  
Type Strain
Yes  
Exemplar DOI
10.1601/ex.3422  
Exemplar Name
Aggregatibacter aphrophilus  
Taxon DOI
10.1601/tx.9784  
Biosafety Level
1  
Organism Comments
  
Cultured
Yes  
Culture Type
Isolate  
Organism Type
Natural  
Uncultured Type
  
Commercial Strain
  
Commercial Strain Comments
  
ORGANISM TAXONOMY
NCBI Taxonomy ID 985008
NCBI Kingdom
  
NCBI Phylum
Proteobacteria  
NCBI Class
Gammaproteobacteria  
NCBI Order
Pasteurellales  
NCBI Family
Pasteurellaceae  
NCBI Genus
Aggregatibacter  
NCBI Species
Aggregatibacter aphrophilus  
ISOLATION CLASSIFICATION
Ecosystem
Host-associated  
Ecosystem Category
Human  
Ecosystem Type
Circulatory system  
Ecosystem Subtype
Blood  
Specific Ecosystem
Unclassified  
ORGANISM EXTERNAL REFERENCES
Strain Info ID
Genbank 16S ID AY362906
Synonym List
  
GENERAL PROPERTIES
Oxygen Requirement
Facultative  
Cell Shape
Rod-shaped  
Motility
Nonmotile  
Sporulation
  
Temperature Range
Mesophile  
Temperature Optimum
37  
Salinity
  
pH
  
Cell Diameter
  
Cell Length
  
Color
  
Gram Staining
Gram-  
Biotic Relationships
ID 1
Term Symbiotic
Symbiotic Physical Interaction
Endosymbiotic intracellular  
Symbiotic Relationship
Parasitic  
Symbiont Name
  
Symbiont Taxon ID
  
Cell Arrangements Chains
Pairs
Singles
Diseases
  
Known Habitats Host
Oral cavity
Metabolisms
  
Phenotypes Pathogen
Energy Sources
  

 

 

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